BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916887

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G52545.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   424    4e-118


> AT5G52545.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured 
cell; Has 16 Blast hits to 16 proteins in 8 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 
16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 
| chr5:21323781-21325596 REVERSE LENGTH=780
Length=780

 Score =  424 bits (229),  Expect = 4e-118
 Identities = 343/393 (87%), Gaps = 28/393 (7%)
 Strand=Plus/Plus

Query  1    ATGGGAAGATCATATCAGAAGACTTCCTATGGCATACACGCGGGCCAAAGAAAGGAGAAC  60
            |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct  230  ATGGGAAGATCATATCAGAAGACTTCCTTTGGCACACACGCGGGCCAAAGAAAGGAGAAC  289

Query  61   CACGCGGCTATGCTTTCATCCAATTTAGCTGTAAAGAGCAATCTCCTGATTTCTACATCT  120
            | || || ||||| ||  | | | ||  |    || | | |   ||     | || |   
Sbjct  290  CTCGGGGTTATGC-TT--T-C-A-TT--C----AATA-C-A--GCC-----T-TA-A---  323

Query  121  AAAGTGAGTACACAGGAAGCTGAATTGGCGAAGGAGAAAATGCATGGGAGATTAGCTTGT  180
            | |||||| | ||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  324  AGAGTGAGCATACAGGAAGCTGAATTGGCGAAAGAGAAGATGCATGGGAGATTAGCTTGT  383

Query  181  GGTAGACCTTTGGTGGTGCGTTTAGCTAGTGAGAAGCAACTAGAAGATAT-CTCTCATGA  239
            ||||| ||||| ||||||||| |||||||||||||||| ||||||||| | |||||||||
Sbjct  384  GGTAGGCCTTTAGTGGTGCGTCTAGCTAGTGAGAAGCATCTAGAAGAT-TCCTCTCATGA  442

Query  240  TCACTCCAAAAGATCATTACCAGAAGCAAACAGAACGAGGTTTGTAAACGGGAGCAGCTC  299
            |||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct  443  TCACTCCAAAAGATCATTACCAGAAGGAAACAGAACCAGATTTGTAAACGGGAGCAGCTC  502

Query  300  AGGACAAATGAGCCGAGACGAAAAAGTAGCTGCTATTAAGAACAAACTCAAAGCTTTGGA  359
            |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct  503  AGGACAAATGAGCCGAGACGAAAAAGTAACTGCCATTAAGAACAAACTCAAAGCTTTGGA  562

Query  360  AGAAGATGAGAAACGAGATCCCAAGAAACAGAA  392
            ||||||||||||||| |||||||||||||||||
Sbjct  563  AGAAGATGAGAAACGTGATCCCAAGAAACAGAA  595



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18850405875


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5