BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916891

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G52600.1 | Symbols: AtMYB82, MYB82 | myb domain protein 82 |...   922    0.0  


> AT5G52600.1 | Symbols: AtMYB82, MYB82 | myb domain protein 82 
| chr5:21343102-21343968 REVERSE LENGTH=701
Length=701

 Score =  922 bits (499),  Expect = 0.0
 Identities = 576/612 (94%), Gaps = 9/612 (1%)
 Strand=Plus/Plus

Query  1    ATGGAACACAAAAGGGCAGAAGGGAAGTCTTACGTGAAGAGAGGTTTGTGGCAACCTGAA  60
            ||||||  |||||| | ||||||||||||||||||||||||||| |||||| |||| |||
Sbjct  1    ATGGAATGCAAAAGAGAAGAAGGGAAGTCTTACGTGAAGAGAGGGTTGTGGAAACCAGAA  60

Query  61   GAAGACATGATATTAAAAAGCTGTGTTGAGACTCATGGAGAAGGAAACTGGGCAGACATT  120
            ||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct  61   GAAGATATGATATTAAAAAGCTATGTTGAGACTCATGGTGAAGGAAACTGGGCAGACATT  120

Query  121  TCTCGTAGATCCGGGTTGAAGAGAGGAGGAAAAAGCTGTAGGTTGAGATGGAAGAACTAT  180
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  121  TCTCGTAGATCCGGGTTGAAGAGAGGAGGAAAAAGCTGTAGGCTGAGATGGAAGAACTAT  180

Query  181  CTAAGACCAAATATCAAAAGAGGAAGCATGTCACCTCAAGAACAAGACCTCATTATCCGC  240
            ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct  181  CTAAGACCAAATATCAAAAGAGGAAGCATGTCACCACAAGAACAAGACCTTATCATCCGC  240

Query  241  ATGCATAAGCTTCTTGGAAACCGATGGTCGTTGATCGCCGGTCGTCTCCCAGGTCGCACT  300
            ||||||||||||||||||||| |||||||||||||||| ||||| || |||||||| |||
Sbjct  241  ATGCATAAGCTTCTTGGAAACAGATGGTCGTTGATCGCTGGTCGCCTTCCAGGTCGTACT  300

Query  301  GACAATGAAGTCAAGAACTACTGGAATACTCATTTGAACAAGAAATCTAGTTCCCGAAAA  360
            ||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| |
Sbjct  301  GACAATGAAGTGAAGAACTACTGGAATACTCATTTGAACAAGAAACCTAATTCCCGAAGA  360

Query  361  CAGAATGCACCTGAATCAA---TCGGCGCCACTCCTTTCACCGATAAGCCAGTTATGTCT  417
            |||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||
Sbjct  361  CAGAATGCACCTGAATCAATCGTCGGCGCCACTCCTTTCACGGATAAGCCAGTTATGTCT  420

Query  418  ACagaactgagaagaagccatggagaagaaggagaaggagaagaggagagcaatacctgg  477
            ||||||||||||||||||||| | | |||| | | |||||||||||||||||||||||||
Sbjct  421  ACAGAACTGAGAAGAAGCCAT-G-G-AGAA-G-G-AGGAGAAGAGGAGAGCAATACCTGG  474

Query  478  atggaggagaCCAACCACTTTGGCTATGACGTCCACGTAGGATCTCCCTTGCCACTTATT  537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  475  ATGGAGGAGACCAACCACTTTGGCTATGACGTCCACGTAGGATCTCCCTTGCCACTTATT  534

Query  538  TCCCACTACCCAGACAACACTCTTGTGTTTGACCCATGTTTTGCCTTTACTGATTTCTTT  597
            ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||
Sbjct  535  TCCCACTACCCAGACAACACTCTCGTGTTTGACCCATGTTTTTCCTTTACCGATTTCTTT  594

Query  598  CCTCTGCTTTAG  609
            ||||||||||||
Sbjct  595  CCTCTGCTTTAG  606



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29336741848


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5