BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916896
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52660.2 | Symbols: | Homeodomain-like superfamily protein ... 1541 0.0
> AT5G52660.2 | Symbols: | Homeodomain-like superfamily protein
| chr5:21359059-21362160 REVERSE LENGTH=1483
Length=1483
Score = 1541 bits (834), Expect = 0.0
Identities = 916/954 (96%), Gaps = 12/954 (1%)
Strand=Plus/Plus
Query 24 TTCCGACGGATATTTCTTGGATCCGACGGGTATGAATGTTCCTGGTCTCGGACCTTCCTT 83
||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 138 TTCTGACGGATATTTCTTGGATCCGACCGGTATGACTGTTCCTGGTCTCGGACCTTCCTT 197
Query 84 TACCGCCGCCG-----T-TTCTTCTTCACCGACGACTTCTTCTACCGCCGTGACTGTGAC 137
||| ||||||| | |||||||||||| |||||||||||||| |||||| ||||| |
Sbjct 198 TACAGCCGCCGTTTCTTCTTCTTCTTCACCAACGACTTCTTCTACGGCCGTGGCTGTGGC 257
Query 138 GGATGCGACGGCGATGGTTTCTTCGTCGGAGGAGGATTTGAGTAAGAAGATTAGGAAGCC 197
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 258 GGATGTGACGGCGATGGTTTCTTCTTCGGAGGAGGATTTGAGTAAGAAGATTAGGAAGCC 317
Query 198 TTATACTATTACTAAGTCTAGAGAGAGCTGGACTGAGCCTGAGCATGATAAATTCCTTGA 257
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 318 TTATACTATTACTAAGTCTAGAGAGAGCTGGACGGAGCCTGAGCATGATAAATTCCTTGA 377
Query 258 AGCTCTTCAATTGTTTGATAGAGACTGGAAGAAGATTGAAGCTTTTATTGGGTCAAAGAC 317
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 378 AGCTCTTCAATTGTTTGATAGAGACTGGAAGAAGATTGAAGCTTTTATTGGTTCAAAGAC 437
Query 318 AGTGATTCAGATACGAAGTCATGCTCAGAAGTATTTTCTTAAGGTACAAAAGAGTGGGAC 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 AGTGATTCAGATACGAAGTCATGCTCAGAAGTATTTTCTTAAGGTACAAAAGAGTGGGAC 497
Query 378 GGGTGAACATCTCCCTCCTCCTCGACCTAAAAGGAAAGCCGCTCATCCATATCCTCAGAA 437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 CGGTGAACATCTCCCTCCTCCTCGACCTAAAAGGAAAGCCGCTCATCCATATCCTCAGAA 557
Query 438 GGCTCACAAGAATGTGCAACCT-CAAGTACCGGGGTCATTCAAGTCAACATCTGAACCAA 496
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 558 GGCTCACAAGAATGTGCAA-CTGCAAGTACCAGGGTCATTCAAGTCAACATCTGAACCAA 616
Query 497 ATGACCCAAGTTTTATGTTTAGGCCCGAGTCTTCTTCAATGCTGATGACTTCTCCAACCA 556
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 617 ATGACCCAAGTTTTATGTTTAGGCCTGAGTCTTCTTCAATGCTGATGACTTCGCCAACCA 676
Query 557 CTGCTGC--C-GATCCATGGACAAATAATACGCAAACAATTAGCTTCACACCCGTCCCAA 613
||||||| | | |||||||||||||||| ||||||||||||||||||| ||| ||||||
Sbjct 677 CTGCTGCTGCGGCTCCATGGACAAATAATGCGCAAACAATTAGCTTCACTCCCCTCCCAA 736
Query 614 AAGCAGGAGCAGGAGCTAATAACAATTGTTCTAGTAGTTCTGAAAATACTCCAAGGCCAC 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 737 AAGCAGGAGCAGGAGCTAATAACAATTGTTCTAGTAGTTCTGAAAATACTCCAAGACCAC 796
Query 674 GATCCAACAGGGACGCAAGTGACCAGGGAAATGTTGGCCATTCATTAAGAGTTTTACCGG 733
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 797 GATCCAACAGGGACGCAAGAGACCATGGAAATGTTGGCCATTCATTAAGAGTTTTACCGG 856
Query 734 ACTTTGCCCAAGTATACGGCTTCATTGGAAGTGTTTTTGACCCATATGCAAGTAATCATC 793
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 857 ACTTTGCCCAAGTATACGGCTTCATTGGAAGTGTGTTTGACCCATATGCAAGTAATCATC 916
Query 794 TACAAAAGCTGAAGAAGATGGACCCCATAGATGTTGAAACAGTGTTACTATTGATGAGAA 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 TACAAAAGCTGAAGAAGATGGACCCCATAGATGTTGAAACAGTGTTACTATTGATGAGAA 976
Query 854 ATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCATAGACGGCTTCTTTCGTCTT 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 ATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCATAGACGGCTTCTTTCGTCTT 1036
Query 914 ATGATATCGGATCTGAGACAGCAACTGATCGTGATGGAGTGAATAAA-CCTTAA 966
|||||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 1037 ATGATATCGGATCTGAGACAGCAACTGATCATGGTGGAGTGAATAAAACCTTAA 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5