BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916900

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G52740.1 | Symbols:  | Copper transport protein family | chr...   532    6e-151


> AT5G52740.1 | Symbols:  | Copper transport protein family | chr5:21382530-21383180 
FORWARD LENGTH=357
Length=357

 Score =  532 bits (288),  Expect = 6e-151
 Identities = 334/357 (94%), Gaps = 0/357 (0%)
 Strand=Plus/Plus

Query  1    ATGCAGGTAGTTATGCTGAAATTGGATGTTCATTGTGAAAGAACCaaaaaaaaaGCTATG  60
            |||||||||||| | |||||||| |||||||||||||||| ||||||| |||||||||||
Sbjct  1    ATGCAGGTAGTTGTACTGAAATTAGATGTTCATTGTGAAAAAACCAAACAAAAAGCTATG  60

Query  61   TCAACCGTATGTTGTCTCTCAGGAGTTAATTCGGTGGACGTGAACGACGGTAAACTAACA  120
            ||||| ||||||||||||||||||||||| |||||||| ||||| || ||||||||||| 
Sbjct  61   TCAACTGTATGTTGTCTCTCAGGAGTTAACTCGGTGGAGGTGAAAGATGGTAAACTAACG  120

Query  121  GTGACCGGAGAGATTGATGCCTATATGATTGTGAAGAAATTGAAGAAGATATGTCATACC  180
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTGACGGGAGAGATTGATGCCTATATGATTGTGAAGAAATTGAAGAAGATATGTCATACC  180

Query  181  GAGTTTATCTCGGTTGGACCGGTTAAAGAACCAGAGAAAAAGAAGCCTGATGATCCGAAG  240
            |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  181  GAGTTTATATCGGTTGGACCGGTTAAAGAACCAGAGAAGAAGAAGCCTGATGATCCGAAG  240

Query  241  AAGCCTGAAACAAAGCCACCAGATGTGATTTATAATTGTGTCCCTCCATATCCACCTTAT  300
            ||||||||||| |||||||||||||| |||||| ||| ||||||||||| ||||||||||
Sbjct  241  AAGCCTGAAACGAAGCCACCAGATGTCATTTATCATTATGTCCCTCCATGTCCACCTTAT  300

Query  301  TACCATCATTTCAACGGATGTTACAATGAAGATCCCTATGCTTGCGTCATCTCTTGA  357
            |||||| ||||||||||||||||||||||||||||| | |||||||||| |||||||
Sbjct  301  TACCATAATTTCAACGGATGTTACAATGAAGATCCCAACGCTTGCGTCACCTCTTGA  357



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16739160417


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5