BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916924
Length=363
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52965.1 | Symbols: | Protein of unknown function (DUF1278)... 566 6e-161
AT5G52975.1 | Symbols: | Protein of unknown function (DUF1278)... 545 8e-155
> AT5G52965.1 | Symbols: | Protein of unknown function (DUF1278)
| chr5:21478841-21479203 FORWARD LENGTH=363
Length=363
Score = 566 bits (306), Expect = 6e-161
Identities = 344/363 (95%), Gaps = 0/363 (0%)
Strand=Plus/Plus
Query 1 ATGGCAAGCAAAACTGTTCTCTCAATATCTTTAATGGTTTCCCTTTGTGTTGCCATATTT 60
||||||| ||||||| |||||||||| |||||||||||||||||||||| |||||| |||
Sbjct 1 ATGGCAACCAAAACTTTTCTCTCAATCTCTTTAATGGTTTCCCTTTGTGCTGCCATTTTT 60
Query 61 GTCACTCAAGGAGTAGCTCATACGCAAACACCGCCAACGGTTCCAGGACTTTTCCCACCT 120
||| |||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||||
Sbjct 61 GTCTCTCAAGGAGTAGCTCATATGCAAACACCACCAACGGTTCCAGGACTTCTCCTACCT 120
Query 121 GGCTTACCTATTGATCTTGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGATGTGTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGCTTACCTATTGATCTTGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGATGTGTG 180
Query 181 CTCGAGATCGCCAAATCAATTTTCTCCGGAAAATTTGAAAATGTCGAAGCCGCATGTTGC 240
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 181 CTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCATGTTGC 240
Query 241 AAGGCGTTTTCGACCTTAGATGCTAACTGTTGGCCCCAAATGTTTCCGTTGAATCCGTTC 300
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 241 AAGGCGTTTTCAACCTTAGATGCTAACTGTTGGCCCCATATGTTTCCGTTGAATCCATTT 300
Query 301 TTCCCTCCTCTCCTCAAGGATAACTGTGCCCGCATTGTCCCCAACTCCCCTACACACAAC 360
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 301 TTCCCTCCTCTCCTCAAGGACAACTGCGCTCGCATTGTCCCCAACTCCCCTACACACAAC 360
Query 361 TAA 363
|||
Sbjct 361 TAA 363
> AT5G52975.1 | Symbols: | Protein of unknown function (DUF1278)
| chr5:21481457-21482035 FORWARD LENGTH=579
Length=579
Score = 545 bits (295), Expect = 8e-155
Identities = 344/367 (94%), Gaps = 5/367 (1%)
Strand=Plus/Plus
Query 1 ATGGCAAGCAAAACTGTTCTCTCAAT-ATCTTTAATGGTTTCCCTTTGTGTTGCCATATT 59
|||| |||||||||| |||||||| | || ||| || |||||||||||||||||||| ||
Sbjct 58 ATGGGAAGCAAAACTATTCTCTCAGTCAT-TTTGATTGTTTCCCTTTGTGTTGCCATTTT 116
Query 60 TGTCACTCAAGGAGTAGCTCATACGCAAACACCGCC-A--ACGGTTCCAGGACTTTTCCC 116
||||||||||||||||||||||| ||||||||| || | |||||||||||| |||||||
Sbjct 117 TGTCACTCAAGGAGTAGCTCATATGCAAACACCACCGACGACGGTTCCAGGAATTTTCCC 176
Query 117 ACCTGGCTTACCTATTGATCTTGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGATG 176
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 177 ACCTGGCTTACCTATTGATCTGGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGATG 236
Query 177 TGTGCTCGAGATCGCCAAATCAATTTTCTCCGGAAAATTTGAAAATGTCGAAGCCGCATG 236
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 237 TGTGCTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCATG 296
Query 237 TTGCAAGGCGTTTTCGACCTTAGATGCTAACTGTTGGCCCCAAATGTTTCCGTTGAATCC 296
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 297 TTGCAAGGCGTTTTCGACCTTAGATGCTAACTGTTGGCCTCACATGTTTCCGTTGAATCC 356
Query 297 GTTCTTCCCTCCTCTCCTCAAGGATAACTGTGCCCGCATTGTCCCCAACTCCCCTACACA 356
|||||||||||||||||||||||||| ||| || || |||||||||||||||||||||||
Sbjct 357 GTTCTTCCCTCCTCTCCTCAAGGATAGCTGCGCTCGTATTGTCCCCAACTCCCCTACACA 416
Query 357 CAACTAA 363
|||||||
Sbjct 417 CAACTAA 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17040766911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5