BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg916927 Length=363 Score E Sequences producing significant alignments: (Bits) Value AT5G52975.1 | Symbols: | Protein of unknown function (DUF1278)... 507 4e-143 AT5G52965.1 | Symbols: | Protein of unknown function (DUF1278)... 499 6e-141 > AT5G52975.1 | Symbols: | Protein of unknown function (DUF1278) | chr5:21481457-21482035 FORWARD LENGTH=579 Length=579 Score = 507 bits (274), Expect = 4e-143 Identities = 330/356 (93%), Gaps = 7/356 (2%) Strand=Plus/Plus Query 1 ATGGGAAGCAAAGCTGTTGTCTCAAG-C-TTCTTAATGGTTTCCCTTTGTGTTGCCATTT 58 |||||||||||| || || |||| || | || || || |||||||||||||||||||||| Sbjct 58 ATGGGAAGCAAAACTATTCTCTC-AGTCATT-TTGATTGTTTCCCTTTGTGTTGCCATTT 115 Query 59 TTGTCACTCAAGGAGTAGCTCATACGCAAACACCACC-A--ACGGTTCCAGGACTTTTCC 115 |||||||||||||||||||||||| |||||||||||| | |||||||||||| |||||| Sbjct 116 TTGTCACTCAAGGAGTAGCTCATATGCAAACACCACCGACGACGGTTCCAGGAATTTTCC 175 Query 116 CACCTGGCTCACCCATTGATCTTGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGAT 175 ||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 176 CACCTGGCTTACCTATTGATCTGGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGAT 235 Query 176 GTGTGCTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCAT 235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 GTGTGCTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCAT 295 Query 236 GTTGTAAGGCGTTTTTGACCTTAGATACCAACTGTTGGCCACAAATGTTTCCGTTGAATC 295 |||| |||||||||| |||||||||| | ||||||||||| || |||||||||||||||| Sbjct 296 GTTGCAAGGCGTTTTCGACCTTAGATGCTAACTGTTGGCCTCACATGTTTCCGTTGAATC 355 Query 296 CGTTCTTCCCTCCTCTCCTCAAGGATATCTGCGCTCGCATTGTCCCCAATTCCCCT 351 ||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||| Sbjct 356 CGTTCTTCCCTCCTCTCCTCAAGGATAGCTGCGCTCGTATTGTCCCCAACTCCCCT 411 > AT5G52965.1 | Symbols: | Protein of unknown function (DUF1278) | chr5:21478841-21479203 FORWARD LENGTH=363 Length=363 Score = 499 bits (270), Expect = 6e-141 Identities = 325/352 (92%), Gaps = 2/352 (1%) Strand=Plus/Plus Query 1 ATGGGAAGCAAAGCTGTTGTCTCAAGCTTC-TTAATGGTTTCCCTTTGTGTTGCCATTTT 59 |||| || |||| || || |||||| | || ||||||||||||||||||| ||||||||| Sbjct 1 ATGGCAACCAAAACTTTTCTCTCAATC-TCTTTAATGGTTTCCCTTTGTGCTGCCATTTT 59 Query 60 TGTCACTCAAGGAGTAGCTCATACGCAAACACCACCAACGGTTCCAGGACTTTTCCCACC 119 |||| |||||||||||||||||| |||||||||||||||||||||||||||| ||| ||| Sbjct 60 TGTCTCTCAAGGAGTAGCTCATATGCAAACACCACCAACGGTTCCAGGACTTCTCCTACC 119 Query 120 TGGCTCACCCATTGATCTTGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGATGTGT 179 ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TGGCTTACCTATTGATCTTGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGATGTGT 179 Query 180 GCTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCATGTTG 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GCTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCATGTTG 239 Query 240 TAAGGCGTTTTTGACCTTAGATACCAACTGTTGGCCACAAATGTTTCCGTTGAATCCGTT 299 |||||||||| ||||||||| | ||||||||||| || ||||||||||||||||| || Sbjct 240 CAAGGCGTTTTCAACCTTAGATGCTAACTGTTGGCCCCATATGTTTCCGTTGAATCCATT 299 Query 300 CTTCCCTCCTCTCCTCAAGGATATCTGCGCTCGCATTGTCCCCAATTCCCCT 351 |||||||||||||||||||| | ||||||||||||||||||||| |||||| Sbjct 300 TTTCCCTCCTCTCCTCAAGGACAACTGCGCTCGCATTGTCCCCAACTCCCCT 351 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17040766911 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5