BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916927
Length=363
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52975.1 | Symbols: | Protein of unknown function (DUF1278)... 507 4e-143
AT5G52965.1 | Symbols: | Protein of unknown function (DUF1278)... 499 6e-141
> AT5G52975.1 | Symbols: | Protein of unknown function (DUF1278)
| chr5:21481457-21482035 FORWARD LENGTH=579
Length=579
Score = 507 bits (274), Expect = 4e-143
Identities = 330/356 (93%), Gaps = 7/356 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAGCAAAGCTGTTGTCTCAAG-C-TTCTTAATGGTTTCCCTTTGTGTTGCCATTT 58
|||||||||||| || || |||| || | || || || ||||||||||||||||||||||
Sbjct 58 ATGGGAAGCAAAACTATTCTCTC-AGTCATT-TTGATTGTTTCCCTTTGTGTTGCCATTT 115
Query 59 TTGTCACTCAAGGAGTAGCTCATACGCAAACACCACC-A--ACGGTTCCAGGACTTTTCC 115
|||||||||||||||||||||||| |||||||||||| | |||||||||||| ||||||
Sbjct 116 TTGTCACTCAAGGAGTAGCTCATATGCAAACACCACCGACGACGGTTCCAGGAATTTTCC 175
Query 116 CACCTGGCTCACCCATTGATCTTGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGAT 175
||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 176 CACCTGGCTTACCTATTGATCTGGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGAT 235
Query 176 GTGTGCTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCAT 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 GTGTGCTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCAT 295
Query 236 GTTGTAAGGCGTTTTTGACCTTAGATACCAACTGTTGGCCACAAATGTTTCCGTTGAATC 295
|||| |||||||||| |||||||||| | ||||||||||| || ||||||||||||||||
Sbjct 296 GTTGCAAGGCGTTTTCGACCTTAGATGCTAACTGTTGGCCTCACATGTTTCCGTTGAATC 355
Query 296 CGTTCTTCCCTCCTCTCCTCAAGGATATCTGCGCTCGCATTGTCCCCAATTCCCCT 351
||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct 356 CGTTCTTCCCTCCTCTCCTCAAGGATAGCTGCGCTCGTATTGTCCCCAACTCCCCT 411
> AT5G52965.1 | Symbols: | Protein of unknown function (DUF1278)
| chr5:21478841-21479203 FORWARD LENGTH=363
Length=363
Score = 499 bits (270), Expect = 6e-141
Identities = 325/352 (92%), Gaps = 2/352 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGCAAAGCTGTTGTCTCAAGCTTC-TTAATGGTTTCCCTTTGTGTTGCCATTTT 59
|||| || |||| || || |||||| | || ||||||||||||||||||| |||||||||
Sbjct 1 ATGGCAACCAAAACTTTTCTCTCAATC-TCTTTAATGGTTTCCCTTTGTGCTGCCATTTT 59
Query 60 TGTCACTCAAGGAGTAGCTCATACGCAAACACCACCAACGGTTCCAGGACTTTTCCCACC 119
|||| |||||||||||||||||| |||||||||||||||||||||||||||| ||| |||
Sbjct 60 TGTCTCTCAAGGAGTAGCTCATATGCAAACACCACCAACGGTTCCAGGACTTCTCCTACC 119
Query 120 TGGCTCACCCATTGATCTTGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGATGTGT 179
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGGCTTACCTATTGATCTTGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGATGTGT 179
Query 180 GCTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCATGTTG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCATGTTG 239
Query 240 TAAGGCGTTTTTGACCTTAGATACCAACTGTTGGCCACAAATGTTTCCGTTGAATCCGTT 299
|||||||||| ||||||||| | ||||||||||| || ||||||||||||||||| ||
Sbjct 240 CAAGGCGTTTTCAACCTTAGATGCTAACTGTTGGCCCCATATGTTTCCGTTGAATCCATT 299
Query 300 CTTCCCTCCTCTCCTCAAGGATATCTGCGCTCGCATTGTCCCCAATTCCCCT 351
|||||||||||||||||||| | ||||||||||||||||||||| ||||||
Sbjct 300 TTTCCCTCCTCTCCTCAAGGACAACTGCGCTCGCATTGTCCCCAACTCCCCT 351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17040766911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5