BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916929
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52990.1 | Symbols: | SNARE-like superfamily protein | chr5... 747 0.0
> AT5G52990.1 | Symbols: | SNARE-like superfamily protein | chr5:21483928-21485287
FORWARD LENGTH=1360
Length=1360
Score = 747 bits (404), Expect = 0.0
Identities = 446/466 (96%), Gaps = 3/466 (1%)
Strand=Plus/Plus
Query 252 GCTTGATCCAATTTTCGCTGAGATTGTTGGTGTTGTTGATTTTG-A--ATTGGATATGGA 308
|||||||||| ||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 614 GCTTGATCCAGTTTTCGCTGAGATTGTTGGTGTTGTTGATTTGGAATTATTGGATATGGA 673
Query 309 TTTGGTTGGATCACCGAGGAGTGTAGCGAGAGAGAGTCGGAATCCGAGTATTGATTCGTC 368
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 674 TTTGGTTGGATCACCGAGGAGTGTAGCGAGAGAGAGTCGAAATCCGAGTATTGATTCATC 733
Query 369 TAAAGGAAGAAGAGCTGCTTTGATGCCACTTTTGGGGAAGCCATTGAAAGCGTTGAAGAA 428
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 734 TAAAGGAAGAAGAGCTGCTTTGATGCCACTTTTGGGGAAACCATTGAAGGCGTTGAAGAA 793
Query 429 GAAGAAGAGATTGCATAATGAAGGAAAAGGAGAAGATTCTTGTGAGGTTGGTTCGATTCA 488
||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||
Sbjct 794 GAAGAAGAGATTGCATAATGAAGCAAAAGGGGGAGATTCTTGTGAGGTTGGTTCGATTCA 853
Query 489 GGAGATATCAGAGAAGAATGTTGATGTATGTGGGAATGGTAACAATGGAGTCTTACGCAA 548
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 854 GGAGATATCAGAGAAGAATGTTGATTTATGTGGGAATGGTAATAATGGAGTCTTACGCAA 913
Query 549 GGAACTGAGAAATGGTTTGTTGAGTGATCATCATCATAGACAAAAGGCGAAACAGATATG 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 914 GGAACTGAGAAATGGTTTGTTGAGTGATCATCATCATAGACAAAAGGCGAAACAGATTTG 973
Query 609 GAAGAAACATGTTTGGGTTGTGTTGATGTTTGATTTCTGCATCTGTGCTATTCTATTTGG 668
||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 974 GAAGAAACATGTTTGGGTTGTGTTGATGTTTGATTTCTGCATCTGTGCTGTTTTGTTTGG 1033
Query 669 AATCTGGCTTTGGATTTGTGAAGGGTTTCAATGCATTGAAGGGTAA 714
||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1034 AATTTGGCTTTGGATTTGTGAAGGGTTTCAATGCATTCAAGGGTAA 1079
Score = 399 bits (216), Expect = 1e-110
Identities = 240/252 (95%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 1 ATGATTTCAAATCCAAGTTTATTGTCATACACTTGCATTGCGAAAGGAACCGTAATTCTC 60
||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 261 ATGATTTCAAATCCAAGTTTATTATCGTACACTTGCATTGCGAAAGGAACCGTAGTTCTC 320
Query 61 GCTGAGTTCGTTTCAAGGCAAGAGCCAGGAATCGAAGCTATAGCTTTAAGATGCATCGAG 120
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 321 GCGGAGTTCGTTTCAAGGCAAGAGCCAGGAATCGAAGCTATAGCTTTACGATGCATCGAG 380
Query 121 AACACGCCTCCTCATCATTCAATGTTCTCTCATACAGTTCACAAGAAGACATACACATTC 180
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 381 AACACGCCTCCTCATCATTCAATGTTTTCTCATACAGTTCACAAGAAGACGTATACATTC 440
Query 181 GCAATCGACGATGATTCCTTTGTTTCTTTCGCGATTTCTGATGAAACTATGGAGAAACCT 240
||||||||||||||||||||||||| |||| |||||||||||||| | ||||||||||||
Sbjct 441 GCAATCGACGATGATTCCTTTGTTTATTTCTCGATTTCTGATGAATCCATGGAGAAACCT 500
Query 241 GAATCATTCTGG 252
||||||||||||
Sbjct 501 GAATCATTCTGG 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5