BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916934
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protei... 1820 0.0
> AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protein
of 46 kD | chr5:21485455-21487991 REVERSE LENGTH=1539
Length=1539
Score = 1820 bits (985), Expect = 0.0
Identities = 1157/1237 (94%), Gaps = 23/1237 (2%)
Strand=Plus/Plus
Query 1 ATGGGTGGTCTGTCTATGGAGGAATTGCCTTTATCAGCGTTGTTCGAGCAAGCAAGGAAA 60
||||||||| || ||||||||||| |||||||||| | | | ||||||||||| ||||||
Sbjct 123 ATGGGTGGTTTGGCTATGGAGGAAATGCCTTTATCGGTGCTATTCGAGCAAGCTAGGAAA 182
Query 61 ATTCATCTCGCGGCTTCAGAGTCTGGTACCGATCAGGATGTTGTGAAGAAAGGATGTGAG 120
|||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 183 ATTCATCTTGCTGCTTCAGAGTCTGGTGTTGATCAGGATGTTGTGAAGAAAGGATGTGAG 242
Query 121 ATGTTTCAGAAATGCGAAGACATGATCGGAAAATTGG-GCTTGTTCTCTTCTAACGAGAC 179
||||||||||| |||||||| |||||||| || ||| || |||| || |||||||||||
Sbjct 243 ATGTTTCAGAAGTGCGAAGATATGATCGGGAAGCTGGCGC-TGTTTTCGTCTAACGAGAC 301
Query 180 TAAAGAAGATATCAGCACGAACAATCTCAAGTACCTTTTGGTGCCTTATTATCTTGCGGA 239
|||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 302 TAAAGAAGATATTAGCACCAACAATCTCAAATATCTTTTGGTGCCTTATTATCTTGCGGA 361
Query 240 GTTGACGGAGAAAATCATACAGGAGGACCGTATTCAGATTGTCAAGGCCTCATATGCAAA 299
|||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 362 GTTGACAGAGAAAATCATACAGGAGGACCGGATTCAGATTGTCAAAGCCTCGTATGC--- 418
Query 300 GTTGAAGCTGAGTTTTCTGCTGAGTGAGTTCTTTTCGTTCTGTGAGGCAATGGAACTTGT 359
| | || | || || ||||||||||||||||||||||||||||| |||||
Sbjct 419 --T--A----AG---T-TG--AAG-GAGTTCTTTTCGTTCTGTGAGGCAATGGAGCTTGT 463
Query 360 TCCAGATGAGGAGTTGGAGGCTTCTTCACGA--A-GTTCTGGTGCACCTGCAGATCGAAG 416
||| ||||||||||||||||||||||||||| | |||||||||||||||| ||||||||
Sbjct 464 TCCGGATGAGGAGTTGGAGGCTTCTTCACGAGGAGGTTCTGGTGCACCTGCTGATCGAAG 523
Query 417 GGCTTTGAAGATAGCTCGCTTCAAACGTCAAAAGGCTGCAGAGGCAAAGCTTCTTGAAAT 476
|||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 524 GGCTCTCAAGATAGCTCGGTTCAAACGTCAAAAGGCTGCAGAGGCAAAGCTTCTTGAAAT 583
Query 477 TAAAGAAAGGAAGGAGCGACGTGGACGTTCCACTAAAGCAGCAGCCTTGTCGACTCCAGT 536
|||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct 584 TAAAGAGAGGAAGGAGCGACGTGGACGTTCCACTAAAGCATCAGCTTTGTCGACTCCGGT 643
Query 537 TGAATCTGGAGAAGATGATATTCCAGATGATGACAGCGAAGAAGAGAGAGAGGCCTGGCT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TGAATCTGGAGAAGATGATATTCCAGATGATGACAGCGAAGAAGAGAGAGAGGCCTGGCT 703
Query 597 CTCCTCAATTAACTTGGCTATTTGTAAGGCTGTTGATTTGTTGGAAATGCTAAAGAGAGA 656
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 704 CTCCTCAATTAACTTGGCTATTTGTAAGGCTATTGATCTGTTGGAAATGCTAAAGAGAGA 763
Query 657 AGAGGAAATGCTCTCTGCAATAAAGGAAAGACAGTTGAAGGATGGAGAGGATGGGTTCTC 716
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct 764 AGAGGAAATGCTCTCTGCAATAAAGGAAAGACAGTTGAAGGATGGAGAGGGTGGATTTTC 823
Query 717 TCGGGATGCTCTTGATGATCGTACAAAGAAAGCTGAAACCTGGCACAGAGACGCTGCTGC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TCGGGATGCTCTTGATGATCGTACAAAGAAAGCTGAAACCTGGCACAGAGACGCTGCTGC 883
Query 777 AAGGATACAGTACTCTAAACCGGCACAACCAATCACTTGTGCCACATTTGCACAAGATGT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 AAGGATACAGTACTCTAAACCGGCACAACCAATCACTTGTGCCACATTTGCACAAGATGT 943
Query 837 GTTAGAAGGAAGAGCTTCTGTATCACAAGGTCACGATCACAAGAACCAACCTCTTATATT 896
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 944 GTTAGAAGGAAGAGCTTCGGTATCACAAGGTCACGAACACAAGAACCAACCTCTTATATT 1003
Query 897 CGGTCCAGCAAGCATCGTGGGTGGACCGCTCTCTACCGAGAGAGAGAGGATGATAGCTCA 956
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1004 CGGTCCAGCAAGCATCGTGGGTGGACCGCTCTCTACCGAGAGAGAAAGAATGATAGCTCA 1063
Query 957 GGTTTTCCAACCAAGTCACAGGATGCCAACAATGTGCATAGAGGATGCTGGGTTAACAGA 1016
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 GGTCTTCCAACCAAGTCACAGGATGCCAACAATGTGCATAGAGGATGCTGGGTTAACAGA 1123
Query 1017 GATGAACATAATGAATGATTGGCAAGAGCAGACGAAAAAAGCCATTGAAGAAGCAACGAC 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1124 GATGAACATAATGAATGATTGGCAAGAGCAGACGAAAAAAGCCATTGAAGAAGCAACCAC 1183
Query 1077 ATCATGGTACAATGATAAACCTCTaagaagaaaggaagaagacgaggaagaggatgatga 1136
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1184 CTCATGGTACAATGATAAACCTCTAAGAAGAAAAGAAGAAGACGAGGAAGATGATGATGA 1243
Query 1137 agacgaagaagCTGTAATGAAAGCTAGAGCTTTTGATGATTGGAAGGACGATAATCCTCG 1196
||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1244 AGACGAAGAAGCTGTGATGAAAGCTAGAGCTTTCGATGATTGGAAGGATGATAATCCTCG 1303
Query 1197 TGGTGCAGGTAACAAGAAACTCACACCTTGTGGCTGA 1233
||||||||||||||||||||||||||||||||||||
Sbjct 1304 CGGTGCAGGTAACAAGAAACTCACACCTTGTGGCTGA 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60592057815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5