BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916940
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53030.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1077 0.0
> AT5G53030.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G27810.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink). | chr5:21505074-21506455 FORWARD LENGTH=1109
Length=1109
Score = 1077 bits (583), Expect = 0.0
Identities = 696/747 (93%), Gaps = 21/747 (3%)
Strand=Plus/Plus
Query 1 ATGGTTTTTGTCAACG---ATCAAGATCGGTTCTGTTC--C-ACGTC-TAA--A-CTTCC 50
||||||||||| || | ||||||||||||||||||| | || | ||| | |||||
Sbjct 246 ATGGTTTTTGTTAATGATCATCAAGATCGGTTCTGTTCTTCTAC-ACGTAAGCAGCTTCC 304
Query 51 TCTGTTTTCATATCCAATGAATAACAGAGTATATGAAACAACTCCGGGATTAGCTACACC 110
|||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 305 TCTGTTTTCATATCCAATGAATAACATTGCATATGAAACTACTCCGGGATTAGCTACACC 364
Query 111 TCCGGTTAATATCGCAGGATCTGTACCTTTTCTTTGGGAAGAAGCTCCGGGAAAGCCTCG 170
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 365 TCCGGTTAACATCGCTGGATCTGTTCCTTTTCTTTGGGAAGAAGCTCCGGGAAAGCCTCG 424
Query 171 TCGTGTTAAAAAATCGGCGAGGTCAAATCAGAACGGTGTTGTGAGATGTCTTGAGCTTCC 230
||||||||||||| ||||||||| |||||||| ||||| |||||| |||||||||||||
Sbjct 425 TCGTGTTAAAAAACCGGCGAGGTTGAATCAGAAAGGTGTCGTGAGAAGTCTTGAGCTTCC 484
Query 231 TCCGAGGTTACTTTTGCCCGGAGAATCTACGACGGTGAATGAGCCTTCTCCGACTACTGT 290
|||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 485 TCCGAGGTTAGTTTTACCCGGAGAATCAACGACGGTGAATGAGCCTTCTCCGACTACTGT 544
Query 291 TCTTGATGGTCCTTACGATTTACGTCGTCGTTCACTGTCGCTTCCGAGATCAGCGGCTGT 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TCTTGATGGTCCTTACGATTTACGTCGTCGTTCACTGTCGCTTCCGAGATCAGCGGCTGT 604
Query 351 GATTAGGAAGTTAAGAGGAGTTCCGGCGCCGGCGCCGGAGAAAGAACAGAGATTGTTTGG 410
||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 605 TATTAGGAAGTTGAGAGGAGTTCCGGCGCCGGCGCCGGAGAAAGAAGAGAGATTGGTTGG 664
Query 411 TGGGTCTAGTAGATGGGGAAGTTTTGGGAAATGTAAAGAGGTGTCTGAGGGTATATTT-G 469
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 665 TGGGTCTAGTAGATGGGGAAGTTTTGGGAATTGTAAAGAGGTGTCTGAGGGTAT-TTTCG 723
Query 470 ACTTTTCACGTTTTAGAGATGACGGTTTTGATTGCCGGAGGGATTGGACCGGAGGAGGAG 529
||||||||||||||||||||||||||| |||||||||| |||||||| |||| |||||||
Sbjct 724 ACTTTTCACGTTTTAGAGATGACGGTTATGATTGCCGGCGGGATTGGGCCGGTGGAGGAG 783
Query 530 GAGTTGGTAACTTCGCCGGAGACGGCGGCACAAAAGTGAAACTTTATA-GAGTTATAAAG 588
|||||||||||||||||||||| | | |||||||||||||||||| || ||||||||
Sbjct 784 GAGTTGGTAACTTCGCCGGAGA---C-G--CAAAAGTGAAACTTTATAGGA-TTATAAAG 836
Query 589 AAAGGAAGCTTTTTTAATCTCTCTCATACAACAAAGTCAGATTTCTGGTTAAAAATGCAG 648
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 837 AAAGGAAGCTTTTTTAATCTCTCTCATACAACAAAGTCAGATTTTTGGTTAAAAATGCAG 896
Query 649 GCAAGGGTTTACGAAGGGTTTAAGCAAGTGATTCCGTGGAAGCGTAAGCAAGAGAATCTG 708
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 897 GCAAGGGTTTACGAAGGGTTTAAGCAAGTGATTCCATGGAAGCGTAAGCAAGAGAATCTG 956
Query 709 GAAAGAACAAACTCTTCCATTGTTTAA 735
|||||||||||||||||||||||||||
Sbjct 957 GAAAGAACAAACTCTTCCATTGTTTAA 983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5