BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916949
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53700.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 501 4e-141
AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 167 2e-40
> AT5G53700.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21801143-21802787 FORWARD LENGTH=1075
Length=1075
Score = 501 bits (271), Expect = 4e-141
Identities = 567/704 (81%), Gaps = 43/704 (6%)
Strand=Plus/Plus
Query 1 ATGGAAGAATCCTCCGTCAAAGTTCAGGAATCGCTGGA-ACTGAACTGTAGAAAAAGCAT 59
|||||||||||| |||||| || || ||||||| ||| || |||| | | ||| || |
Sbjct 79 ATGGAAGAATCCGCCGTCAGAGGTCTGGAATCGAAGGATAC-GAACAATCGTAAATGCTT 137
Query 60 TAGCACGATTTCCGTTGAAGGATATGACACTTCGCTTCATGGA-TATCCTCTCAAGCTCG 118
||| | ||||||||| || ||||| ||||||||| ||||| || | ||||||||||||||
Sbjct 138 TAGTAAGATTTCCGTCGAGGGATACGACACTTCGGTTCAT-GAGTTTCCTCTCAAGCTCG 196
Query 119 CGTTGAG-AAAGCACTTCGCTTCATGCGGAAAAATCGCAAGTATGTT--TGTTCCAAGAG 175
||||| | |||||| ||||||||||||||||| || | || || || |||||| ||||
Sbjct 197 CGTTG-GCAAAGCATTTCGCTTCATGCGGAAAGATTG-TAG-ATATTGATGTTCCCAGAG 253
Query 176 ACTTTAAAAGGGGTATCCTCAAGAGCCCTCTCTTCATTGA-TTTT--T--G---G--GGA 225
||||||||| | ||||||||||||| |||||||||||| | |||| | | | |||
Sbjct 254 ACTTTAAAAAGCGTATCCTCAAGAGTCCTCTCTTCATT-ATTTTTCATGCGAAAGAAGGA 312
Query 226 GAAGGTGCGAG-AGACAAGGCATTGGAACTTAGTGGAAGTGACGTGGGACGATGGAATGT 284
||| || | | |||||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 313 GAAAGT-CCCGTAGACAAGGCATTGGAACTTAGTGGGACTGACGTGGGAGGATGGAATGT 371
Query 285 AGTCGTTAAGGCTGTACCCCGGCAGGAAGAT-TACTA-TGATCCTGCGGGATTCAACTTC 342
|||||| ||| || ||||| ||||| || || ||| | ||||||| |||| || || |
Sbjct 372 AGTCGTGAAGTCTCTACCCGGGCAGCAA-ATGTAC-AGAGATCCTGGGGGAGTCGACCGC 429
Query 343 TTCAGGGGAGAACGCGA-GTTGGTGGTTAAGGTATATGATTTACCTTCTTCGGTG-CGTA 400
|||| ||||||||| | | | | ||||||||||||||| ||||||| || || | ||
Sbjct 430 TTCAAAGGAGAACGC-ACGCTCATAGTTAAGGTATATGATACACCTTCTACGTTGTC-TA 487
Query 401 AGATTGATGTCCAAATCGGGCTCTGTGAACATTTCTCTTCATGTGGAGAGGTCACCTGTG 460
|||||||| |||| |||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct 488 AGATTGATCTCCAGATCGGGCTGTGTAAACATTTCTCTTCATGTGGAGAGGTCACCGGTA 547
Query 461 TTACTGTTTTAGTCCACGGAATCTT-TG-T-TCACGAAAG-AAAGACTATAATTTCTATT 516
| | |||||| |||||||||| ||| || | ||||||||| |||| || | || ||||
Sbjct 548 TAAGTGTTTTGGTCCACGGAAACTTGTGCTGTCACGAAAGTAAAG-CTCGAGTTGATATT 606
Query 517 ATGGGAGAAGGATGTGTAGAGAAGGCGCAGCAACTAAGTGGACAATGTAACACAGATGGA 576
|||||| ||||||||||||| ||||||| | |||||||||||| ||| | ||||||||
Sbjct 607 ATGGGAAAAGGATGTGTAGACAAGGCGCTGGAACTAAGTGGAC---GTACCGCAGATGGA 663
Query 577 TGGAAGATTGTAGTTGATTCTGTTATCCCGCTA--AGTGCTGATAAAAGAAAGCCTACCG 634
||||||||||||||| ||| |||| | |||| | || || || ||| ||||||||| |
Sbjct 664 TGGAAGATTGTAGTTTATTTTGTTGTGCCGCCAGCAG-GCAGA-AAATTAAAGCCTACTG 721
Query 635 GCTGTGAACATCCAGCTGTTGTACTTGAGAGGATTAAGAAAGCT 678
| ||| ||||||| || ||| | |||||||||| ||||| |||
Sbjct 722 GAAGTGGACATCCAACTATTGGAGTTGAGAGGATGAAGAAGGCT 765
> AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:873331-875251 REVERSE LENGTH=1290
Length=1290
Score = 167 bits (90), Expect = 2e-40
Identities = 203/256 (79%), Gaps = 14/256 (5%)
Strand=Plus/Plus
Query 66 GATTTCCGTTGAAGGATATGACACTTCGCTTCATGGA-TATCCTCTCAAGCTCGCGTT-G 123
||||||||| || |||||||||||| ||| | | || ||| | ||||||||| ||| |
Sbjct 316 GATTTCCGTGGAGGGATATGACACTAGGCTCCGT-GAGTATACAGTCAAGCTCGTGTTGG 374
Query 124 AGAAAGCACTTCGCTTCATGCGGAAAAATCGCA-AGTATGTT-TGTTCCAAGAGACTTTA 181
| ||| || ||||||||||||||||| ||| || | ||| || |||||| |||||||||
Sbjct 375 A-AAAACATTTCGCTTCATGCGGAAAGATCACACA-TAT-TTATGTTCCCAGAGACTTTG 431
Query 182 AAAGGGGTATCCTCAAGAGCCCTC-TCTTCAT-TGATTTTTGGGGAGAAGGT-GCGAGAG 238
||||||||||||||||||| || |||||| || | | ||||||||| |||| ||
Sbjct 432 AAAGGGGTATCCTCAAGAG-TGTCGCCTTCATGTG-TATCAAAGGAGAAGGTGGCGA-AG 488
Query 239 ACAAGGCATTGGAACTTAGTGGAAGTGACGTGGGACGATGGAATGTAGTCGTTAAGGCTG 298
| ||||||||| |||||||||| ||||| |||| |||||| || | |||||||| |||
Sbjct 489 AAAAGGCATTGCTGCTTAGTGGAACTGACGCGGGAGGATGGACTGCAATCGTTAAGCCTG 548
Query 299 TACCCCGGCAGGAAGA 314
|| | ||||| ||||
Sbjct 549 CACTCTGGCAGAAAGA 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35063434606
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5