BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916961
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53210.1 | Symbols: SPCH | basic helix-loop-helix (bHLH) DNA... 1799 0.0
> AT5G53210.1 | Symbols: SPCH | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:21586606-21588941 REVERSE
LENGTH=1095
Length=1095
Score = 1799 bits (974), Expect = 0.0
Identities = 1060/1101 (96%), Gaps = 8/1101 (1%)
Strand=Plus/Plus
Query 1 ATGCAGGAGATAATACCGGATTTTCTTGAAGAGTGTGAATTCGTCGACACTTCACTAGCC 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGCAGGAGATAATACCGGATTTTCTTGAAGAGTGTGAATTTGTCGACACTTCACTAGCC 60
Query 61 GGAGATGATTTATTTGCCATCTTAGAAAGTCTTGAAGGCGCCGGAGAGATATCTCCGACC 120
||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 61 GGAGATGATCTATTTGCCATCTTAGAGAGTCTTGAAGGTGCCGGAGAGATATCTCCGACA 120
Query 121 GCTGCATCTACACCTAAAGATGGAACCACAAGTTCCAAGGAGTTAGTTAAGGATCAAGAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTGCATCTACACCTAAAGATGGAACCACAAGTTCCAAGGAGTTAGTTAAGGATCAAGAT 180
Query 181 TATGAAAACTCATCTCCTaagaggaagaagcaaagactagaaaccaggaaagaagaggac 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TATGAAAACTCATCTCCTAAGAGGAAAAAGCAAAGACTAGAAACCAGGAAAGAAGAGGAC 240
Query 241 gaagaagaagaagacggagatggagaaggagaaggtgaagaagagaataagcaagaTGGG 300
|||||||||||||||||||| |||| | || | |||||||| |||||||||||||||
Sbjct 241 GAAGAAGAAGAAGACGGAGACGGAG-A--AGCA---GAAGAAGATAATAAGCAAGATGGG 294
Query 301 CAACACAAA-ATGTCTCATGTAACCGTGGAACGTAACCGGAGAAAGCAAATGAACGAGCA 359
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CAACA-AAAGATGTCTCATGTAACCGTGGAACGTAACCGGAGAAAGCAAATGAACGAGCA 353
Query 360 CTTAACTGTTTTACGTTCTCTTATGCCTTGTTTCTACGTCAAACGGGGGGACCAAGCATC 419
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CTTAACCGTTTTGCGTTCTCTTATGCCTTGTTTCTACGTCAAACGGGGGGACCAAGCATC 413
Query 420 GATCATAGGAGGAGTTGTGGAGTACATAAGCGAGTTACAACAAGTTCTTCAGTCTTTAGA 479
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 414 GATCATAGGAGGAGTTGTGGAGTACATAAGCGAGTTACAACAAGTTCTCCAATCTTTGGA 473
Query 480 AGCCAAGAAACAACGTAAAACCTATGCCGAAGTCCTAAGCCCGAGACTTGTCCCGAGCCC 539
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 474 AGCCAAGAAACAACGTAAAACCTACGCCGAAGTCCTAAGCCCGAGAGTTGTCCCGAGCCC 533
Query 540 TCGTCCTTCACCGCCTGTTCTAAGCCCGAGAAAACCACCTCTTAGCCCGCGTATCAACCA 599
||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 534 TCGTCCTTCACCGCCTGTTCTAAGCCCAAGAAAACCGCCTCTTAGCCCGCGCATCAACCA 593
Query 600 CCACCAGATCCACCACCACCTCCTTCTCCCTCCTATAAGTCCTCGAACACCTCAGCCCAC 659
||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 594 CCACCAGATTCACCACCACCTACTTCTCCCTCCCATAAGTCCTCGAACACCTCAGCCAAC 653
Query 660 AAGCCCATACCGGGCCATTCCACCGCAACTACCACTCATCCCACAGCCTCCGCTTCGCTC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 AAGCCCATACCGGGCCATTCCACCGCAACTACCACTCATCCCACAGCCTCCGCTTCGCTC 713
Query 720 TTACAGCTCATTGGCAAGTTGCAGCAGCTTAGGAGACCCACCTCCATATTCTCCTGCTTC 779
||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 714 TTACAGCTCATTGGCCAGTTGCAGCAGCTTAGGAGATCCACCTCCATACTCTCCTGCTTC 773
Query 780 AACTTCTTCATCTCCTTCAGTTAGTAGTAGCCATGAAAGTAGTGTGATCAATGAGCTTGT 839
| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 774 ATCTTCTTCATCTCCTTCAGTTAGTAGTAACCATGAGAGTAGTGTGATCAATGAGCTTGT 833
Query 840 TGCTAACTCAAAATCGGCTTTGGCTGATGTGGAAGTGAAGTTCTCAGGAGCTAACGTGCT 899
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 834 TGCTAACTCAAAATCGGCTTTGGCTGATGTGGAAGTGAAGTTTTCAGGAGCTAACGTGCT 893
Query 900 GCTCAAAACGGTGTCGCATAAGATCCCGGGACAAGTTATGAAGATAATTTCTGCTCTTGA 959
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 894 GCTCAAAACGGTGTCGCATAAGATCCCGGGACAAGTTATGAAGATAATTGCTGCTCTTGA 953
Query 960 AAATTTGGCTCTTGAGATTCTTCAGCTTAATATTAACACCGTCGACGAAACCATGCTTAA 1019
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 954 AGATTTGGCTCTTGAGATTCTTCAGGTTAATATTAACACCGTCGACGAAACCATGCTTAA 1013
Query 1020 TTCTTTCACCATCAAGATTGGAATTGAGTGCCAACTAAGTGCAGAAGAACTGGCTCAACA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TTCTTTCACCATCAAGATTGGAATTGAGTGCCAACTAAGTGCAGAAGAACTGGCTCAACA 1073
Query 1080 AATTCAGCAAACATTCTGCTA 1100
|||||||||||||||||||||
Sbjct 1074 AATTCAGCAAACATTCTGCTA 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53965585875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5