BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916965
Length=534
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53260.1 | Symbols: | Seed maturation protein | chr5:216046... 725 0.0
AT5G53270.1 | Symbols: | Seed maturation protein | chr5:216062... 486 7e-137
> AT5G53260.1 | Symbols: | Seed maturation protein | chr5:21604662-21605674
REVERSE LENGTH=531
Length=531
Score = 725 bits (392), Expect = 0.0
Identities = 489/534 (92%), Gaps = 13/534 (2%)
Strand=Plus/Plus
Query 1 ATGGGTTCATCAAAAGATGA-TGCTAGTGTCACCAACATCTCTGTAGAAGAGCATTTTAG 59
|||||||||||||||||| | ||||||||||||||||||||| || || ||||| |||||
Sbjct 1 ATGGGTTCATCAAAAGAT-AGTGCTAGTGTCACCAACATCTCCGTGGAGGAGCACTTTAG 59
Query 60 CGTCTCTCAATCTAGTCCTGGTGGACAGTTTGTAGGCCCAACAGAAGAAATTTCCACGGC 119
||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 60 CGTCTCTCAGTCTAGCCCCGGTGGACAGTTTGTAGGCCCAACAGAAGAGATTTCCACCGC 119
Query 120 GGCGGAAGCACTTATCGGGAGGTCGACAACATTAACGGAGGCTCTGAAAGCAGCAGCCAT 179
||||||||||||||||||||||| || ||||||||||||||||| ||||||||| ||||
Sbjct 120 AGCGGAAGCACTTATCGGGAGGTCAACGACATTAACGGAGGCTCTTAAAGCAGCATCCAT 179
Query 180 GAATGTCGGCCACAAACCAGTGGAAACCACCGACGTAGCTGCCATAAAAGAGGTAGAAAC 239
||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 180 GAATGTCGGCCACAAACCAGTTGAAACCACCGACGTGGCTGCCATAAAAGAGGTGGAAAC 239
Query 240 AAGGGCTATCGGAGGAGACGACATAGAAGGTACTGGCGGTGGTGTAACCGCCGTGGCAAG 299
||||||||||||| | | ||| |||||| | || ||||||||||| || || |||||
Sbjct 240 AAGGGCTATCGGA-G-G-CGATATAGAA---AGTGAAGGTGGTGTAACTGCTGTAGCAAG 293
Query 300 TAAGGCGATTGCTCGTAA-CAAAACAATAGGAAAAGA-AAGTGAGAAGACAAATCTCCGC 357
||||||| |||||||||| ||||| |||||||||||| || |||||||||||||||| ||
Sbjct 294 TAAGGCGGTTGCTCGTAACCAAAA-AATAGGAAAAGATAA-TGAGAAGACAAATCTCGGC 351
Query 358 GACGTTATCGCGGAGATTGATGTGAAAGTAACGAGAGACAGAGAAGTGACAAGTGAAGAC 417
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 352 GACGTTATCGCGGAGATTGATGTGAAAGTAACGAGGGACAGAGAAGTGACAAGTGAAGAC 411
Query 418 GCAGAAGCAGTGGTTCAAGCTGAGCTTAATCATTCTCCTTTCAAGAATATTATTCCTGGA 477
|||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 412 GCAGAAGCAGTGATTCGGGCTGAGCTGAATCATTCTCCTTTCAATAATATTATTCCTGGA 471
Query 478 GGTGTTGCTGAATCCGTCGCTGCAGCTTATAAACTTAATCACGATCCATC-TCT 530
|||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 472 GGTGTTGCTGAATCCGTCGCTGCAGCTTATAAACTTAATCACGATCCATCGTCT 525
> AT5G53270.1 | Symbols: | Seed maturation protein | chr5:21606271-21607297
REVERSE LENGTH=872
Length=872
Score = 486 bits (263), Expect = 7e-137
Identities = 387/446 (87%), Gaps = 12/446 (3%)
Strand=Plus/Plus
Query 84 ACAGTTTGTAGGCCCAACAGAAGAAATTTCCACGGCGGCGGAAGCACTTA-TCGGGAGGT 142
||||| || |||| |||||||| |||||||||||||||| ||||| | || |||||||||
Sbjct 419 ACAGTATGCAGGCACAACAGAACAAATTTCCACGGCGGCTGAAGCGC-TAGTCGGGAGGT 477
Query 143 CGACAACATTAACGGAGGCTCTGAAAGCAGCAGCCATGAATGTCGGCCACAAACCAGTGG 202
| || ||||| || || || || |||||||| || || |||||||||| ||||| || |
Sbjct 478 CAACGACATTGACAGAAGCACTCAAAGCAGCGGCGATAAATGTCGGCCGTAAACCGGTAG 537
Query 203 AAACCACCGACGTAGCTGCCATAAAAGAGGTAGAAACAAGGGCTATCGGAGGAGACGACA 262
||||||||||| | ||||||||||||||||| ||| | |||||||| ||||| || |
Sbjct 538 AAACCACCGACTTGGCTGCCATAAAAGAGGTGGAAGCTAGGGCTAT---AGGAGGTGATA 594
Query 263 TAGAAGGTACTGGCGGTGGTGTAACCGCCGTGGCAAGTAAGGCGATTGCTCGTAA-CAAA 321
||||| | | | |||||||||||||| || |||||||| ||| |||||||||| ||||
Sbjct 595 TAGAAAG--C-GATGGTGGTGTAACCGCTGTAGCAAGTAAAGCGGTTGCTCGTAACCAAA 651
Query 322 ACAATAGGAAAAGA-AAGTGAGAAGACAAATCTCCGCGACGTTATCGCGGAGATTGATGT 380
| ||||||| |||| || |||||||||||||||| |||||||||||||||||||||||||
Sbjct 652 A-AATAGGAGAAGATAA-TGAGAAGACAAATCTCGGCGACGTTATCGCGGAGATTGATGT 709
Query 381 GAAAGTAACGAGAGACAGAGAAGTGACAAGTGAAGACGCAGAAGCAGTGGTTCAAGCTGA 440
||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 710 GAAAGTAACGAGAGATAGAGAAGTGACAAGTGAAGACGCAGAAGCAGTGATTCGGGCTGA 769
Query 441 GCTTAATCATTCTCCTTTCAAGAATATTATTCCTGGAGGTGTTGCTGAATCCGTCGCTGC 500
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 770 GCTGAATCATTCTCCTTTCAATAATATTATTCCTGGAGGTGTTGCTGAATCCGTCACTGC 829
Query 501 AGCTTATAAACTTAATCACGATCCAT 526
|||||||||||||||| | ||||||
Sbjct 830 AGCTTATAAACTTAATTGCAATCCAT 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25569180823
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5