BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916966
Length=480
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53270.1 | Symbols: | Seed maturation protein | chr5:216062... 693 0.0
AT5G53260.1 | Symbols: | Seed maturation protein | chr5:216046... 569 6e-162
> AT5G53270.1 | Symbols: | Seed maturation protein | chr5:21606271-21607297
REVERSE LENGTH=872
Length=872
Score = 693 bits (375), Expect = 0.0
Identities = 446/481 (93%), Gaps = 2/481 (0%)
Strand=Plus/Plus
Query 1 ATGATGTTTGCGTTCGATCTTTTGAAACAGTATGCAGGCCCAACAGAACAAATTTCCACG 60
|||||||| | ||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 393 ATGATGTTCGGGTTCGGCCTTTTGAAACAGTATGCAGGCACAACAGAACAAATTTCCACG 452
Query 61 GCAGCTGAGGCACTTGTCGGGAGGTCGACGACACTGACAGAAGCTCTCAAAGCCGCGGCG 120
|| ||||| || || ||||||||||| |||||| |||||||||| |||||||| ||||||
Sbjct 453 GCGGCTGAAGCGCTAGTCGGGAGGTCAACGACATTGACAGAAGCACTCAAAGCAGCGGCG 512
Query 121 ATAAATGTCGGTCGCAAACCAGTAGAAACCACCGACGTGGCTGCCATAAAAGAGGTGGAA 180
||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 513 ATAAATGTCGGCCGTAAACCGGTAGAAACCACCGACTTGGCTGCCATAAAAGAGGTGGAA 572
Query 181 TCTAGGGCTATCGGAGGCGACATAGAAAGCCATGGTGGTGTAACTGCTGTAGCAAGTAAG 240
|||||||||| ||||| || ||||||||| ||||||||||||| ||||||||||||||
Sbjct 573 GCTAGGGCTATAGGAGGTGATATAGAAAGCGATGGTGGTGTAACCGCTGTAGCAAGTAAA 632
Query 241 GCGGTTGCTCGTAACCAAAAAATAGGTA-AAGAAAATGAGAAGACAAATCTCCGCGACGT 299
|||||||||||||||||||||||||| | |||| |||||||||||||||||| |||||||
Sbjct 633 GCGGTTGCTCGTAACCAAAAAATAGG-AGAAGATAATGAGAAGACAAATCTCGGCGACGT 691
Query 300 TATTGCGGAGATTGATGTGAAAGTAACGAGAGATAGAGAAGTGACAAGTGAAGATGCAGA 359
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 692 TATCGCGGAGATTGATGTGAAAGTAACGAGAGATAGAGAAGTGACAAGTGAAGACGCAGA 751
Query 360 AGCAGTGGTTCAGGCTGAGCTCAATCATTCTCCTTTCAATAATATTATTCCTGGAGGTGT 419
||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 752 AGCAGTGATTCGGGCTGAGCTGAATCATTCTCCTTTCAATAATATTATTCCTGGAGGTGT 811
Query 420 TGCTGAATCCGTCACTGCAGCTTATAAACTCAATTGCAATCCATGCAATCTATCTCTTTG 479
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 812 TGCTGAATCCGTCACTGCAGCTTATAAACTTAATTGCAATCCATGCAATGTATCTCTTTG 871
Query 480 A 480
|
Sbjct 872 A 872
> AT5G53260.1 | Symbols: | Seed maturation protein | chr5:21604662-21605674
REVERSE LENGTH=531
Length=531
Score = 569 bits (308), Expect = 6e-162
Identities = 394/437 (90%), Gaps = 0/437 (0%)
Strand=Plus/Plus
Query 27 ACAGTATGCAGGCCCAACAGAACAAATTTCCACGGCAGCTGAGGCACTTGTCGGGAGGTC 86
||||| || ||||||||||||| | |||||||| ||||| || |||||| ||||||||||
Sbjct 84 ACAGTTTGTAGGCCCAACAGAAGAGATTTCCACCGCAGCGGAAGCACTTATCGGGAGGTC 143
Query 87 GACGACACTGACAGAAGCTCTCAAAGCCGCGGCGATAAATGTCGGTCGCAAACCAGTAGA 146
|||||| | || || ||||| ||||| || | || |||||||| | ||||||||| ||
Sbjct 144 AACGACATTAACGGAGGCTCTTAAAGCAGCATCCATGAATGTCGGCCACAAACCAGTTGA 203
Query 147 AACCACCGACGTGGCTGCCATAAAAGAGGTGGAATCTAGGGCTATCGGAGGCGACATAGA 206
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 204 AACCACCGACGTGGCTGCCATAAAAGAGGTGGAAACAAGGGCTATCGGAGGCGATATAGA 263
Query 207 AAGCCATGGTGGTGTAACTGCTGTAGCAAGTAAGGCGGTTGCTCGTAACCAAAAAATAGG 266
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 AAGTGAAGGTGGTGTAACTGCTGTAGCAAGTAAGGCGGTTGCTCGTAACCAAAAAATAGG 323
Query 267 TAAAGAAAATGAGAAGACAAATCTCCGCGACGTTATTGCGGAGATTGATGTGAAAGTAAC 326
||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 324 AAAAGATAATGAGAAGACAAATCTCGGCGACGTTATCGCGGAGATTGATGTGAAAGTAAC 383
Query 327 GAGAGATAGAGAAGTGACAAGTGAAGATGCAGAAGCAGTGGTTCAGGCTGAGCTCAATCA 386
||| || |||||||||||||||||||| |||||||||||| ||| ||||||||| |||||
Sbjct 384 GAGGGACAGAGAAGTGACAAGTGAAGACGCAGAAGCAGTGATTCGGGCTGAGCTGAATCA 443
Query 387 TTCTCCTTTCAATAATATTATTCCTGGAGGTGTTGCTGAATCCGTCACTGCAGCTTATAA 446
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 444 TTCTCCTTTCAATAATATTATTCCTGGAGGTGTTGCTGAATCCGTCGCTGCAGCTTATAA 503
Query 447 ACTCAATTGCAATCCAT 463
||| ||| | ||||||
Sbjct 504 ACTTAATCACGATCCAT 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22856536885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5