BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917002
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53592.1 | Symbols: | FBD-like domain family protein | chr5... 200 3e-50
> AT5G53592.1 | Symbols: | FBD-like domain family protein | chr5:21773688-21774927
FORWARD LENGTH=940
Length=940
Score = 200 bits (108), Expect = 3e-50
Identities = 195/234 (83%), Gaps = 18/234 (8%)
Strand=Plus/Plus
Query 1029 CAAGTGTTTGCAATCCTCTCTCGAGTTTGTCGATCTCAAATTCCAAATCTCGGGACCTGT 1088
||||||||||||||||||| |||||||||| ||| ||||| | | || |||| |||
Sbjct 602 CAAGTGTTTGCAATCCTCTGTCGAGTTTGTGGATTTCAAA---CGATTCAATGGACATGT 658
Query 1089 TACAGAAATGAAAATGAAGCTAGTAAGGTACTTCTTAGAGAATTCG-GCTATACTCAAGA 1147
| | | ||||||||||| ||||||||||||||||||||| | ||| |||||||
Sbjct 659 T---G-CA--CAAATGAAGCTATTAAGGTACTTCTTAGAGAATT-GTGCTGCCCTCAAGA 711
Query 1148 AACTCACTCTACATTTGGATTCTAAATCAACAGAAGATGAAATC-TTGACGAAACTCTTG 1206
||||||||||||||||||||| ||| |||||||||||||||| | || | ||||||||||
Sbjct 712 AACTCACTCTACATTTGGATTATAATTCAACAGAAGATGAAACCATT-AAGAAACTCTTG 770
Query 1207 CAAATCCCAAGA---GCCTCTACCAAATGTGAGGTTGTCATTGTCATAAA-GTA 1256
||||||||||| |||||||| |||||||||||||||||||||| ||| |||
Sbjct 771 AAAATCCCAAGAGCCGCCTCTACGAAATGTGAGGTTGTCATTGTCA-AAATGTA 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61796870895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5