BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917013
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05115.1 | Symbols: | pseudogene, hypothetical protein | ch... 590 7e-168
AT1G51370.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 401 4e-111
> AT2G05115.1 | Symbols: | pseudogene, hypothetical protein |
chr2:1834466-1835922 REVERSE LENGTH=1457
Length=1457
Score = 590 bits (319), Expect = 7e-168
Identities = 522/617 (85%), Gaps = 25/617 (4%)
Strand=Plus/Plus
Query 10 GAGTCATGGATACGCAAACTCCGGTTAAATTATTGTTCTCCTCATGGTAGACT-TGATCT 68
||||||| ||||| |||| | ||||||| || || | | | ||| | |||| | |||| |
Sbjct 229 GAGTCATCGATACACAAAGTACGGTTAAGTT-TT-TAC-CGTCAAGATAGA-TGTGATAT 284
Query 69 CTCGTCATGGATTGATGCTGTGACTACGCGTAGGATTCAGCATCTTGATGTTCG-ttttt 127
||||||||||||| ||| || | ||| ||||||||||||||||||||||||| | | ||
Sbjct 285 CTCGTCATGGATTAATGTTGCGGCTAGGCGTAGGATTCAGCATCTTGATGTT-GAATATT 343
Query 128 tttGCGGTAATGAGATACCCCCGAGTTTATATACCTGTGAGACACTGGTACACTTACGAC 187
|||| || |||||||||| || ||||||| |||| ||||||||||||||||||| |||
Sbjct 344 TTTGATGTGGTGAGATACCCTCGTGTTTATAAACCTTTGAGACACTGGTACACTTATGAC 403
Query 188 TCTGTGAGGTCACCTTGTGTAATGCTGACTTTGTTTCCTTGCCTTGTCTGAAGATCATGC 247
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 404 TCTGTGAGGTCACCTTGTGTAATGCTGACTTTGTTTCCTTACCTTGTCTAAAGATCATGC 463
Query 248 ATCTACAGCATA-A-TAAATATCCCAATGAGACTACGTTGCAGAAACTTATCTCAGGCTC 305
|| ||| | ||| | || ||| ||||| |||| ||||||||||||||||||||||||||
Sbjct 464 ATTTAC-G-ATATATTAGATACCCCAACAAGACCACGTTGCAGAAACTTATCTCAGGCTC 521
Query 306 TCCAGTTCTGGAAGATTTAACCATC-TACAGATCTTGGAATGGTGATGATAAGGCGAATG 364
|||| ||||| |||||||||||||| | |||||||| ||||| |||||||| | ||||
Sbjct 522 TCCACTTCTGAAAGATTTAACCATCCT-CAGATCTTCGAATG---ATGATAAGACAAATG 577
Query 365 TTTTACTAGTGCGCTCTCATACGCTAAAGAGAGTCTATATAAATGAGGGC-ACCCAAGTT 423
|||||| ||||||||||| ||| |||||||||||||| || ||||| | | |||||
Sbjct 578 TTTTACAAGTGCGCTCTCGTACTCTAAAGAGAGTCTACATCGATGAGT-CTA---AAGTT 633
Query 424 GTGATTGATGCACCTCTACTCCAGTGTTTGAGCGCTACGGTTTCCTCAACAAAGAACTTT 483
|||||| ||||||||||||||||||||||||| |||| || || | | |||||||||||
Sbjct 634 GTGATTTATGCACCTCTACTCCAGTGTTTGAGGGCTAATGTCTCTTTACCAAAGAACTTT 693
Query 484 CAGATCATCAATGTTGG-TTCCTCTGCCAAACTAGATATTGGTTTCCCCTATT-GCCATA 541
|||||||||||| |||| |||||||||||||||||||||||||||| || | |||||
Sbjct 694 CAGATCATCAAT-TTGGGTTCCTCTGCCAAACTAGATATTGGTTTCTA-TAATAGCCATG 751
Query 542 CGACATACAGTAGCATGATTCCTGACATTCTGACCGATATATCGAGGGTCAGGGAGCTGG 601
||||||||| || || ||||||||||||||| | ||| ||||| ||||| | |||||| |
Sbjct 752 CGACATACAATAACACGATTCCTGACATTCTCAGCGACATATCCAGGGTTAAGGAGCTAG 811
Query 602 TTATTAATAATGCTATT 618
|||||| ||||| ||||
Sbjct 812 TTATTAGTAATGATATT 828
> AT1G51370.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr1:19045212-19047453 FORWARD LENGTH=1707
Length=1707
Score = 401 bits (217), Expect = 4e-111
Identities = 432/532 (81%), Gaps = 30/532 (6%)
Strand=Plus/Plus
Query 9 GGAGTCATGGATACGCAAACTCCGGTTAAATTAT-TGTTCTCCTCATGGTAGACT-TGAT 66
||| |||||||||||||||||||| ||| ||| | ||| || ||||| || | | ||||
Sbjct 345 GGATTCATGGATACGCAAACTCCGTTTAGATT-TGGGTTATCATCATGATA-AGTATGAT 402
Query 67 CTC-TCGTCATGGATTGATGCTGTGACTACGCGTAGGATTCAGCATCTTGATGTTCGttt 125
||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 403 CTCAT-GTCATGGATTGATGCTGCGACTACGCGTAGGATTCAGCATCTTGATGTTCATTG 461
Query 126 tttttGCGGTAATGAGATACCCCCGAGTTTATATACCTGTGA-GACACTGGTACACTTAC 184
|||| || |||| |||||||| ||| ||||||| || | ||| ||||||||||||
Sbjct 462 TTTTCACGATAATAAGATACCCTTGAGCATATATACATG-CACGACGTTGGTACACTTAC 520
Query 185 GACTCTG-TGAGGTC-ACCTTGTGTAATGCTGACTTTGTTTCCTTGCCTTGTCTGAAGAT 242
||||| | || || | |||| |||| | || ||||||||||| ||||||||||||||
Sbjct 521 GACTCCGTTG-GG-CTGTCTTGACTAATCCCGAGTTTGTTTCCTTACCTTGTCTGAAGAT 578
Query 243 CATGCATCTACAGCATAATAAATATCCCAATGAGACTACGTTGCAGAAACTTATCTCAGG 302
||||||| | | || || |||||||||||||| |||||||||||||||||||||||
Sbjct 579 CATGCATTTTGAAAATGTTAGCTATCCCAATGAGACCACGTTGCAGAAACTTATCTCAGG 638
Query 303 CTCTCCAGTTCTGGAAGATTTAAC-CATCTACAG-ATCTTGGAATGGTGATGATAAGGCG 360
|||||||||||| ||||| |||| | ||| ||| | || | || | || ||||| |
Sbjct 639 CTCTCCAGTTCTAGAAGAATTAATAC-TCTTCAGCA-CT---A-TG-T-ATCCTAAGG-G 689
Query 361 AAT-GTTTTACTAGTGCGCTCTCATACGCTAAAGAGAGTCTATATAAATGAGGGCACCCA 419
|| ||||||| | |||||||| |||||||||||||| || |||| |||||| | |
Sbjct 690 AAACGTTTTACAATTGCGCTCTGATACGCTAAAGAGACTCGATATCAATGAGTTTATTGA 749
Query 420 AGTTGTGATTGATGCACCTCTACTCCAGTGTTTGAGCGCTACGGTTTCCTCAACAAAGAA 479
||||||||| |||||||||||||||||||| |||| |||| | | | ||||||||||||
Sbjct 750 CGTTGTGATTTATGCACCTCTACTCCAGTGTCTGAGGGCTAAGATGTACTCAACAAAGAA 809
Query 480 CTTTCAGATCATCAATGTT-GG-TT-CCTCTGCCAAACTAGATATTGGTTTC 528
|||||||||||||| ||| || || || |||||||||||||||||| ||||
Sbjct 810 CTTTCAGATCATCA--GTTCGGGTTTCC-CTGCCAAACTAGATATTGATTTC 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5