BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917033
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53790.1 | Symbols: | Protein of unknown function (DUF295) ... 1480 0.0
> AT5G53790.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:21843501-21845261 FORWARD LENGTH=1143
Length=1143
Score = 1480 bits (801), Expect = 0.0
Identities = 1013/1113 (91%), Gaps = 24/1113 (2%)
Strand=Plus/Plus
Query 1 ATGTCTCTGCTTTTCGG-TCTAGTTGCAAAACACTCTGTAGAAGAAGGTGACACGGTCCG 59
||||||||||||||||| | ||||||||||||| |||||||||||| ||||| |||||||
Sbjct 1 ATGTCTCTGCTTTTCGGAT-TAGTTGCAAAACATTCTGTAGAAGAAAGTGACGCGGTCCG 59
Query 60 TTTCTGCTCATACCCACGACAAACCCCATACTTGTTGGTCAACTGCAGTTT-GG--ATGT 116
|||||||||||||||||| |||||||||||| ||||| ||||||||||||| || ||||
Sbjct 60 TTTCTGCTCATACCCACGGCAAACCCCATACATGTTGTTCAACTGCAGTTTGGGTAATGT 119
Query 117 AGACAAATATTCAAATATATCTATAAGTTACAATATATTCAATCCAAGGAATGAAAAACT 176
||||| ||||||||||||| |||||||||| |||||||| |||||||||||||||||| |
Sbjct 120 AGACAGATATTCAAATATAACTATAAGTTATAATATATTTAATCCAAGGAATGAAAAAAT 179
Query 177 CATCAAGATCACTGATAAAATTTTTCTAAAAAGTTTACC-GTTGTCCGAAGC-ATTCATC 234
||||||||||||||||||| ||||| ||||||||||||| | | ||||| | |||| ||
Sbjct 180 CATCAAGATCACTGATAAAGTTTTTGTAAAAAGTTTACCGGAT-CCCGAA-CAATTCGTC 237
Query 235 TT-CTTTGGAACCTCACGTAGCTGGGCAGCTTTTATGCACA-ATAT-CTGCACTTACACA 291
|| | ||||||||||||| |||||||||||||||| || | | || | || || | |
Sbjct 238 TTAC-TTGGAACCTCACGAAGCTGGGCAGCTTTTACGCGTATACATGATACAATT--ATA 294
Query 292 CTACTCAGC-GACGTGTTTAATCCTTGGTCCTCAGAATCATCCACCAGAACCATTGCTCT 350
| |||| | ||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 295 TTTCTCA-CTGACGTGTTTAATCCTTGGTCCTCCGAATCATCCACCAGAACCATTACTCT 353
Query 351 GCTTCCATTGGTATTTAAAGGCGTAACGGCCTCAGTTTCATTGTCCACTCCTTTTCCCGA 410
|| ||||||||||| ||| ||| ||| |||||| ||||||||||||||||||| ||| ||
Sbjct 354 GCCTCCATTGGTATCTAATGGCATAAAGGCCTCCGTTTCATTGTCCACTCCTTCTCCAGA 413
Query 411 CCAAGACAATGATTATATAGTTAGTGTCATCTTCTTTGGATCTAAACTTTATTACTGTAT 470
| | ||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||
Sbjct 414 CGACGACAATGATTATATAGTTAGTGTCAGCTTCTTTAGATCTAAACTTTATTATTGTAT 473
Query 471 GCCTAATCGAGATTCAGAGTGGACTAGTATTAACATTCCATTTTCTTGCGATTTCGACTC 530
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 474 GCCTAATCGAGATTCAGAGTGGACTAGTACTAACATTCCATTTTCTTGCGATTTCAACTC 533
Query 531 ACAAGTCGTTTTTTCTCGGAAA-GACCAAATGTTTTACCTCCTCACTACTGGATGTGCCT 589
||||||||||| ||||| ||| | ||||||||||||||||||||| |||||||||||||
Sbjct 534 ACAAGTCGTTTACTCTCGAAAACG-CCAAATGTTTTACCTCCTCACAACTGGATGTGCCT 592
Query 590 ATATAGCTGCCTTGGATCTCAAAAACAATAAGGACCCTACCTTCCTTCAAATACAGTTTC 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATATAGCTGCCTTGGATCTCAAAAACAATAAGGACCCTACCTTCCTTCAAATACAGTTTC 652
Query 650 AGAACTTCCCTTTGATACCACAACACGAGTGGGAGATATTGGCTTCATGTTCACGGAGTG 709
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 653 AGAACTTCCCTTTGATACCACAACACGAGTGGGAGATATTGGCTTCATGTTTACGGAGTG 712
Query 710 ACTATATTGCTGAGTCGTCTTCTGGCGAACGTTTCATTGTTCAATGGTATTTGATGTATG 769
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 713 ACTATATTGCTGAGTCGTCTTCTGGCGAACGTTTCATTGTTCAATGGTATTTGACGTATG 772
Query 770 TGGAGT--C-ATGGTGCAATGGGAACATAACTAAAGTATTTAGAGAAACCAAGCAG-TTC 825
||| | | |||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 773 TGGTGGAACCATGGGGCAATGGGAACATAACTAAAGTATTTAGAGAAACCAAG-AGATTC 831
Query 826 ATGGTGTTCAGGGAAGAAGAAGAGCATAAATTCCAAAGAAGTAAAATGATCACTAACTAC 885
||||| |||| |||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 832 ATGGTCTTCAAGGAAGAAGAAGAGCATAAATTCCAAAGAAGGAAAATGATTGCAAACTAC 891
Query 886 ACAGAAAATATTGGAGATCTTTGCATTTTCATTGGGAACAATGAGACATTTTGTTTAGAG 945
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 892 ACAGAAAATATTGGAGATCTTTGCATTTTCATTGGGAGGAATGAGACATTTTGTTTGGAA 951
Query 946 GCAAGCAAGTATCCAGGACTCAGGCCAAACTCTATATATTATGTTGGTCATGGCTTTGGT 1005
|||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||
Sbjct 952 GCAAGCAAGTATCCGGGACTCAGGCGTAACTCTATATATTATACCGGTCATGGCTTTGGT 1011
Query 1006 GTTTACGATATCAGTAAGAAAAGCGTCCGTGAATATGAATCGGACTTAACAAAGAAATCC 1065
|||||||||||| ||||||||||| ||||||||||||| || ||||||||||| |||||
Sbjct 1012 GTTTACGATATCCGTAAGAAAAGCTTCCGTGAATATGACTCAAACTTAACAAAGGAATCC 1071
Query 1066 AAATTATCATCGACTTCTTTTATAGCAAAGTAT 1098
||||||||||||| |||||||||||||||||||
Sbjct 1072 AAATTATCATCGATTTCTTTTATAGCAAAGTAT 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53965585875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5