BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917041
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53810.1 | Symbols: | O-methyltransferase family protein | ... 948 0.0
> AT5G53810.1 | Symbols: | O-methyltransferase family protein
| chr5:21850179-21853011 REVERSE LENGTH=1536
Length=1536
Score = 948 bits (513), Expect = 0.0
Identities = 923/1115 (83%), Gaps = 52/1115 (5%)
Strand=Plus/Plus
Query 61 AAAGATGAACAACAAGTT---GAAGAGGCCAGGTTGCTAGCGAGGAGGCTCTCGAACGCA 117
||||| |||||| | ||| |||||||| || ||||||||||| |||||| |||| |||
Sbjct 295 AAAGAAGAACAAGAGGTTGAAGAAGAGGCAAGATTGCTAGCGAGAAGGCTCGCGAATGCA 354
Query 118 GCCGCATTC-CCCATGGTTCTCAAAGCAGCCTTAGAGCTCGGTGTCATCGACATTATTGC 176
|||||| || || |||||||||||||| ||||| |||||||| || ||||||| || |
Sbjct 355 GCCGCA-TCACCTATGGTTCTCAAAGCCGCCTTGGAGCTCGGCGTGATCGACACCATCAC 413
Query 177 CACCA-TTGGCGATGGC---TTGTGGCTCTCACCTTCCGAGATAGCACTAAGACTCCCAA 232
|| || | || | |||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 414 CA-CAGTAGGAGGTGGCGATTTGTGGCTCTCACCTTCTGAAATAGCACTAAGACTCCCAA 472
Query 233 CCAAACCTA-GTAACCCCGAGGCTCCGGTTTTGATTGACCGTATGCTCCGGTTACTCGCT 291
||||||| | | |||| || ||||||| |||| | ||||||||||| || || |||| |
Sbjct 473 CCAAACC-ATGCAACCTGGAAGCTCCGGCTTTGCTAGACCGTATGCTTCGATTTCTCG-T 530
Query 292 -AGCTACTCAATCTTGAAGTGTCGTAATGTTGTAACAAAAGAAAACGGTCAAACCGGCAA 350
||| | || |||| || || ||| | ||||| | |||| |||||||||||||| ||
Sbjct 531 CAGCCATTCGGTCTTAAAATGCCGT-A--CTGTAATAGAAGAGAACGGTCAAACCGG-AA 586
Query 351 AA-TCGAGAGGGTATATACAGCTGAACCGGTCTGCAAGTTTCTCTTGAACAATAGTGA-T 408
|| | |||||||||||| ||||||||||||||||||| | |||||||||||| |||||
Sbjct 587 AAGTTGAGAGGGTATATGCAGCTGAACCGGTCTGCAAATATCTCTTGAACAAAAGTGACG 646
Query 409 A-G-CTCAGGATCTTTTGCGTCTCTGATCATG-ATGAACCTTAGCGACGTCA-ACATCAA 464
| | ||| || |||||||| || || | ||| || |||| |||||||| | |||||
Sbjct 647 ACGTCTCGGGTTCTTTTGCATCGCTCTTTATGCTTG-ACCTCAGCGACGT-ATTTATCAA 704
Query 465 GACTTGGGGACATCTC-AAGGGTGTCATTTTAGAAGGAAAAGATGCATTCAATTCTGCTC 523
||| ||| ||||||| || | ||| || |||||||||| ||||||||| | |||||| |
Sbjct 705 GACATGGACACATCTCGAA-GATGTGATATTAGAAGGAAGAGATGCATTTAGTTCTGCCC 763
Query 524 ATGGGATGAAATTATTTGAATACATGC-GGTCCAATGAACAATACT-GCAAACTGTTTAG 581
||||||||||| |||| |||||||| | | || |||| | || | | ||| ||||||
Sbjct 764 ATGGGATGAAACTATTCGAATACATCCAAG-CCGATGAGCGAT-TTGGTAAAGTGTTTAA 821
Query 582 TCAGGCTATGTCGGAATCTTCGTCTATGGTTATGGA-AATAGTTC-TAGAAGCTTACGAT 639
| |||||||| ||||||||| | ||||||| ||| || |||| || || ||| ||
Sbjct 822 CCGGGCTATGTTGGAATCTTCCACCATGGTTACGGAGAA-GGTTCTTA-AATTTTATGAA 879
Query 640 GGATTCAAAGATGTAAAGACTTTAGTGGATGT-GGGAGGAGGACTTGGTAACACTTTAAG 698
|||||||||||||| |||||||| |||||||| ||| ||||||||||| ||||| || |
Sbjct 880 GGATTCAAAGATGTGAAGACTTTGGTGGATGTAGGG-GGAGGACTTGGCAACACACTAGG 938
Query 699 TCTCATCACTTCCAAATATCCTCATATT-TTGGGTATCAATTTCGATTT-GCCTCCCGT- 755
||||||||||||||| ||||||||| || || ||||||||||||||||| | |||| ||
Sbjct 939 TCTCATCACTTCCAAGTATCCTCATCTTATT-GGTATCAATTTCGATTTAG-CTCCGGTG 996
Query 756 TATAGCCCGCGCTC-CTCTTTACCCCGGTATAAAACATGCAGCGGGAGATATGTTTA-CA 813
| ||||| |||| || ||| |||||| | || |||| || || |||||||| | |
Sbjct 997 T-TAGCCAATGCTCATTC-TTATCCCGGTGTGAACCATGTGGCTGGTGATATGTTCATC- 1053
Query 814 AAAATTCCAAATGGAGATGCCATTTTTATGAAATGGAT-CTTACATGATTGGACGGAGGA 872
|| |||||||| || ||||||||||| ||||| ||||| | |||||||||||||||| ||
Sbjct 1054 AAGATTCCAAAGGGGGATGCCATTTTCATGAAGTGGATAC-TACATGATTGGACGGACGA 1112
Query 873 ACAATGCATA-AAGATTCTTAAAAACAGTTGGAAAAGTCTTGAAGAAAATGGAAAAGTGA 931
||||||| || | |||||||||||| ||||||||||||| ||||||||||||||| |||
Sbjct 1113 ACAATGCGTAGCA-ATTCTTAAAAACTGTTGGAAAAGTCTCGAAGAAAATGGAAAACTGA 1171
Query 932 TTATAGTGGAAATGGTTACACCGGTGGAAGCAAAGAGCGGAGATATATGTTCTAACATTG 991
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 TAATAGTGGAAATGGTTACACCGGTGGAAGCAAAGAGCGGAGATATATGTTCTAACATTG 1231
Query 992 TGTTTGGCATGGACATGACAATGTTAACACAATGTTCGGGTGGTAAAGAGAGATCTCTCT 1051
||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1232 TGTTTGGTATGGACATGACAATGTTAACACAATGTTCAGGTGGTAAAGAGAGAGATCTCT 1291
Query 1052 ATGAGTTTGAAAATCTAGCGTATGCATCGGGTTTTTCACGTTGTGAAATTGCATGCTCTG 1111
|||||||||||||| |||| ||||||||||||||||| ||||||| ||| | |||| |||
Sbjct 1292 ATGAGTTTGAAAATTTAGCATATGCATCGGGTTTTTCTCGTTGTGCAATCGTATGCGCTG 1351
Query 1112 TTTATCCGTTTTCCGTCATCGAAATCTATAAATAG 1146
||||||| |||||||||||||||||||| ||||||
Sbjct 1352 TTTATCCATTTTCCGTCATCGAAATCTACAAATAG 1386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56224610400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5