BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917049
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53870.1 | Symbols: ENODL1, AtENODL1 | early nodulin-like pr... 582 2e-165
> AT5G53870.1 | Symbols: ENODL1, AtENODL1 | early nodulin-like
protein 1 | chr5:21869864-21871284 REVERSE LENGTH=1338
Length=1338
Score = 582 bits (315), Expect = 2e-165
Identities = 437/493 (89%), Gaps = 19/493 (4%)
Strand=Plus/Plus
Query 1 ATGTCGGCGATCATGAAAACTCTCTGTTTTTCTTTCCTCATCCTCGCTTCTTTTGCAACT 60
||||||||||||||||||| ||||||||| || ||||| ||||||||||| |||||||||
Sbjct 57 ATGTCGGCGATCATGAAAAGTCTCTGTTTCTCCTTCCTTATCCTCGCTTCATTTGCAACT 116
Query 61 TTCTTCTCTGTTGCTGATGCATGGAGGTTTAACGTCGGAGGTAACGGAGCTTGGGTTATA 120
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 117 TTCTTCTCCGTTGCTGATGCATGGAGGTTTAACGTCGGAGGTAACGGCGCTTGGGTTACA 176
Query 121 AACCCTCAAGAAAACTACAA-A---------AAAGAAACCGTTTCCAAGTCAATGACACT 170
|| ||||||||||||||||| | |||||||||||||||||||||||||| ||
Sbjct 177 AATCCTCAAGAAAACTACAATACTTGGGCTGAAAGAAACCGTTTCCAAGTCAATGACTCT 236
Query 171 CTCTGTAAATTTTAAGTATGCGAAGGGATCAGATTCTGTTCAACAAGTGATGAAGGCAGA 230
|||| | ||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 237 CTCT--A--TTTTAAGTACGCGAAGGGATCAGACTCTGTTCAACAAGTGATGAAAGCAGA 292
Query 231 TTTTGATGGCTGCAATGTTAGAAATCCGATCAAGAACTTTGATAATGGTGAATCTGTTGT 290
||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 293 TTTTGATGGATGCAACGTTAGAAATCCGATCAAGAACTTCGAAAATGGTGAATCTGTGGT 352
Query 291 GACTCTTGATCGATCTGGTCCTTTTTACTTCATAAGTGGTAATGAAGATCACTGTAAAAA 350
|||||||||||||||||| ||||||| |||||||| |||||| ||||||||||| ||||
Sbjct 353 TACTCTTGATCGATCTGGTGCTTTTTATTTCATAAGCGGTAATCAAGATCACTGTCAAAA 412
Query 351 GGGACAGAAACTGATCGTCGTTGTTCTCGCCGTCAGAGATCA-CCAGACGCCTCCTAAAT 409
|||||||||| ||||||||||||| |||||||||||| |||| || || ||||
Sbjct 413 GGGACAGAAATTGATCGTCGTTGTCCTCGCCGTCAGAAATCAACCTT-CGGCTCCGG--- 468
Query 410 CTCATTCCCCTGTTCCTTCAATTTCTCCGGCTCAACCTCCTAAATCTCACTCCCCTGTTT 469
|||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||
Sbjct 469 CTCATTCCCCTGTTCCTTCAGTTTCTCCTACTCAACCTCCTAAATCTCATTCCCCTGTTT 528
Query 470 CTCCCGTTTCTCC 482
|||||||| ||||
Sbjct 529 CTCCCGTTGCTCC 541
Score = 252 bits (136), Expect = 5e-66
Identities = 194/221 (88%), Gaps = 7/221 (3%)
Strand=Plus/Plus
Query 754 CCATCCCCTGTTTCTTCTCCAACCCCTGTTCAGTCTCCTGCTTCTCCTTCTGACCAGACA 813
||||||||||||||||| ||| | |||| ||||||| |||| || || ||||||||| |
Sbjct 954 CCATCCCCTGTTTCTTCCCCATCACCTGATCAGTCTGCTGC-TC-CC-TCTGACCAGTCT 1010
Query 814 ACACCTTTGTCACCTTCTCCTTCGGAAACAACTCCGACCGCCGATAGCATCACAGCGCCG 873
||||| ||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||
Sbjct 1011 ACACCCTTGGCACCTTCTCCTTCCGAAACAACTCCGACCGCCGATAACATCACTGCGCCG 1070
Query 874 GCCCCAAGTCCCAGAAAAAACTCAGCAAGTGGTTTAGCCGTTACTTCGGTTATGACTACA 933
|| || |||||||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1071 GCTCCTAGTCCCAGGACAAACTCAGCAAGTGGTTTAGCCGTTACTTCGGTTATGTCTACA 1130
Query 934 CTATTAAGTGTTG-CTTCTACCATTT-TGATGTTTGCTTAA 972
||||| |||| | ||| |||| ||| ||||||||||||||
Sbjct 1131 CTATTTAGTGC-GACTTTTACC-TTTCTGATGTTTGCTTAA 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47571737209
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5