BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917052

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G53895.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   484    2e-136


> AT5G53895.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G27530.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:21880619-21881204 FORWARD LENGTH=485
Length=485

 Score =  484 bits (262),  Expect = 2e-136
 Identities = 318/345 (92%), Gaps = 4/345 (1%)
 Strand=Plus/Plus

Query  55   CACTCTCTCCAGGGAAGCAATGGAGCTGGAGAGTCATCTGCGAGTATGAACGAGGTGAAA  114
            ||| |||| || ||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct  106  CAC-CTCT-CAAGGAAGCAATGGAGGTGGAGAGTCATCTGCGAGTATGAACGAGGCGAGA  163

Query  115  CAAGAGGCGATGGGAACAAGTACAGATGCTAAGGCACCTGATGTTTCACTCAGCTATGCA  174
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  164  CAAGAGGCGATGGGAACAAGCACAGATGCTAAGGCACCTGATGTTTCACTCAGCTATGCA  223

Query  175  GCGGATACTGCGAAAGAAGGGTTAAAACGAGCCACGGATTTAGCCAAGGAAGAGAGCGGA  234
            |||||||||||||||||||||||||||| ||||| ||||  ||||||| || ||||||||
Sbjct  224  GCGGATACTGCGAAAGAAGGGTTAAAACAAGCCATGGATAAAGCCAAGAAAAAGAGCGGA  283

Query  235  GACGCTGCCACAGAGGAGGCAGGAACGGTTGCAGGCGGCGAGGAGGAGAGTGAAGAGAAT  294
            ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct  284  GACGCTGCCACGGAGGAGGCAGCAACGGTTGCAGGCGGCGAGGACGAGAGTGAAGAGAAT  343

Query  295  ATGCCAGTGGGTGAGATAGGAACTGTTAAGAGGGCAAAATCAATCTTGAAGCTGAAATAT  354
             || |||||||||||||||||||| |||| |||| |||||||||||| ||||||||| ||
Sbjct  344  GTGACAGTGGGTGAGATAGGAACTCTTAA-AGGGAAAAATCAATCTTCAAGCTGAAAAAT  402

Query  355  GTGTCTGTACTCTGTATGTTAGGACTTAAAAAGCCAAATCAATAA  399
             ||||| |||||||||||||||||||||||| |||||||| ||||
Sbjct  403  ATGTCTCTACTCTGTATGTTAGGACTTAAAA-GCCAAATCTATAA  446



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18850405875


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5