BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917056
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54062.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 632 1e-180
AT5G53742.1 | Symbols: | Protein of unknown function (DUF1278)... 390 7e-108
AT5G53740.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 139 3e-32
> AT5G54062.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF1278 (InterPro:IPR010701);
BEST Arabidopsis thaliana protein match is: Protein of unknown
function (DUF1278) (TAIR:AT5G53742.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21938793-21939623
FORWARD LENGTH=831
Length=831
Score = 632 bits (342), Expect = 1e-180
Identities = 555/652 (85%), Gaps = 38/652 (6%)
Strand=Plus/Plus
Query 1 ATGGAAGGTACAAAT-CAAGCTTCTT-TCTCCATGATTCTAGTCGTGGCTCTGTGTGCCA 58
|||||||||| | || ||||| |||| |||| | ||||||||| ||| || |||||||||
Sbjct 65 ATGGAAGGTA-AGATCCAAGC-TCTTCTCTCGACGATTCTAGTTGTGACTTTGTGTGCCA 122
Query 59 CTACTCTATTGAGGCCGGGGATAGC-CGAGGTGCTCGTGA-CA-T-CTCGATTTCCTTCC 114
||||| || ||| ||| ||| |||| | | | | | | | || | || | ||| | | |
Sbjct 123 CTACTTTAGTGAAGCCCGGGCTAGCTC-AACT-C-CCT-ACCAGTGCTGGGTTTTC-T-C 176
Query 115 ATTCCTGGTTCTCCAA-TTGATCTCACAAAATGTTGGTCATCGATCTTCAACGTTCAAGG 173
| || || || |||| |||||||| ||||||||||||||||| || ||||| |||| ||
Sbjct 177 -TACCCGGCTC-CCAAGTTGATCTCGCAAAATGTTGGTCATCGCTCCTCAACATTCACGG 234
Query 174 TTGCAATATCGAAATCTTAAAATCTGCTTTAACCGGTAAGTTTGAAAATGTTGGA-CCAA 232
|||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| || |
Sbjct 235 TTGCAATATCGAAATCTTTAAATCTGTTTTAACCGGTAAGTTTGAAAACGTTGGATCC-A 293
Query 233 CATGCTGCAAGGCGTTTACGGAATTGGATGCAAAGTGTTGGCCAAAAATATTTCCGTTGA 292
| ||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 294 CGTGCTGCAAGGCTTTTACAGAAGTGGATGCAAAGTGTTGGCCAAAAATGTTTCCGTTGA 353
Query 293 ATCCGTTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATGGCAGGTGCACCCG 352
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 354 ATCCATTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATCTCAGGTGCACCAG 413
Query 353 CACACACGACACCTCAATTCCCTGTCATCCCTGGGTTTCCTATTCCTGGTTCTCCGGTCG 412
|||||| |||||| |||||||||||||||||||| || | | || | | | |
Sbjct 414 CACACAAGACACCGCAATTCCCTGTCATCCCTGG-TT-C-T---CC-GAT-C---G---- 458
Query 413 ATCTCACAAAATGTTTGTCATCACTTGTCAGCGTTCAAGGTTGCGTAACTGAAATCTACA 472
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 459 ATCTCACAAAATGTTTGTCATCACTTGTCAACGTTCAAGGTTGTGTAACTGAAATCTACA 518
Query 473 AATCAGTTTTCACACGGAA-GTTTGATAATGTTGGACCAATGTGTTGCAAGGCGTTG-TC 530
|||||||||||||| |||| || |||||| || ||| ||||| ||||||||||| |
Sbjct 519 AATCAGTTTTCACA-GGAAAGTGTGATAACGTAGGATTTATGTGCTGCAAGGCGTTTAT- 576
Query 531 GGCAATGGATGCAAAATGTTGGCCACAAATGTTTCCACTAAATCCGTTCTTCCCTCCTCT 590
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 577 GGCTGTGGATGCAAAATGTTGGCCAAAAATGTTTCCACTAAATCCGTTCTTCCCTCCTCT 636
Query 591 TCTCAAAAACGAATGTTCTCGCATCAACACAGCCGCTCCTACACACAAATGA 642
|||||||| | ||||||||||||||||||| | |||||||||||||| |||
Sbjct 637 CCTCAAAAATGTATGTTCTCGCATCAACACATCTGCTCCTACACACAAGTGA 688
> AT5G53742.1 | Symbols: | Protein of unknown function (DUF1278)
| chr5:21813671-21814018 FORWARD LENGTH=348
Length=348
Score = 390 bits (211), Expect = 7e-108
Identities = 316/363 (87%), Gaps = 21/363 (6%)
Strand=Plus/Plus
Query 283 TTTCCGTTGAATCCGTTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATGGCA 342
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 4 TTTCCGTTGAATCCATTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATCTCT 63
Query 343 GGTGCACCCGCACACACGACACCTCAATTCCCTGTCATCCCTGGGTTTCCTATTCCTGGT 402
|| ||||| ||||||||| ||||||||| | | | | | | | || ||||||
Sbjct 64 GGCGCACCAACACACACGAAACCTCAATT--C---C-T---T--G--T-C-ATCCCTGGT 108
Query 403 TCTCCGGTCGATCTCACAAAATGTTTGTCATCACTTGTCAGCGTTCAAGGTTGCGTAACT 462
|||||| ||||||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct 109 TCTCCGATCGATCTCACAAAATGTTTGTCATCACTTGTTAACGTTGAAGGTTGCGTAACT 168
Query 463 GAAATCTACAAATCAGTTTTCACACGGAA-GTTTGATAATGTTGGACCA-ATGTGTTGCA 520
|||||||||||||||||||||||| |||| ||||| |||||||||| | ||||| ||||
Sbjct 169 GAAATCTACAAATCAGTTTTCACA-GGAAAGTTTGGTAATGTTGGAT-ATATGTGCTGCA 226
Query 521 AGGCGTTGTCGGCAATGGATGCAAAATGTTGGCCACAAATGTTTCCACTAAATCCGTTCT 580
||||||| || || |||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 227 AGGCGTTTTCAGCTGTGGATGTAAAATGTTGGCCACAAATGTTTCCGCTAAATCCGTTCT 286
Query 581 TCCCTCCTCTTCTCAAAAACGAATGTTCTCGC-ATCAACACAGCCGCTCCTACACACAAA 639
|||||||||||||||| || |||||||||| | |||||| ||||| ||||||||||||||
Sbjct 287 TCCCTCCTCTTCTCAAGAAGGAATGTTCTC-CTATCAACGCAGCCACTCCTACACACAAA 345
Query 640 TGA 642
|||
Sbjct 346 TGA 348
> AT5G53740.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: synergid; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G53905.1);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source:
NCBI BLink). | chr5:21811633-21814908 FORWARD LENGTH=828
Length=828
Score = 139 bits (75), Expect = 3e-32
Identities = 109/125 (87%), Gaps = 4/125 (3%)
Strand=Plus/Plus
Query 81 AGCCGAGGTG-CTCGTGACATCTCGATTTCCTTCCATTCCTGGTTCTCCAATTGATCTCA 139
|||||||| | ||||||||| | | ||||| ||| |||||||||||||||||||||||||
Sbjct 420 AGCCGAGG-GACTCGTGACACCGCAATTTCTTTCTATTCCTGGTTCTCCAATTGATCTCA 478
Query 140 CAAAATGTTGGTCATCGA-TCTTCAACGTTCAAGGTTGCAATATCGAAATCTTAAAATCT 198
|||||||||||||||| | || ||||| |||||||||| || ||||| ||||| ||||||
Sbjct 479 CAAAATGTTGGTCATC-ACTCCTCAACATTCAAGGTTGTAAAATCGAGATCTTTAAATCT 537
Query 199 GCTTT 203
| |||
Sbjct 538 GTTTT 542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30994468699
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5