BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg917056 Length=642 Score E Sequences producing significant alignments: (Bits) Value AT5G54062.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 632 1e-180 AT5G53742.1 | Symbols: | Protein of unknown function (DUF1278)... 390 7e-108 AT5G53740.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 139 3e-32 > AT5G54062.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1278) (TAIR:AT5G53742.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21938793-21939623 FORWARD LENGTH=831 Length=831 Score = 632 bits (342), Expect = 1e-180 Identities = 555/652 (85%), Gaps = 38/652 (6%) Strand=Plus/Plus Query 1 ATGGAAGGTACAAAT-CAAGCTTCTT-TCTCCATGATTCTAGTCGTGGCTCTGTGTGCCA 58 |||||||||| | || ||||| |||| |||| | ||||||||| ||| || ||||||||| Sbjct 65 ATGGAAGGTA-AGATCCAAGC-TCTTCTCTCGACGATTCTAGTTGTGACTTTGTGTGCCA 122 Query 59 CTACTCTATTGAGGCCGGGGATAGC-CGAGGTGCTCGTGA-CA-T-CTCGATTTCCTTCC 114 ||||| || ||| ||| ||| |||| | | | | | | | || | || | ||| | | | Sbjct 123 CTACTTTAGTGAAGCCCGGGCTAGCTC-AACT-C-CCT-ACCAGTGCTGGGTTTTC-T-C 176 Query 115 ATTCCTGGTTCTCCAA-TTGATCTCACAAAATGTTGGTCATCGATCTTCAACGTTCAAGG 173 | || || || |||| |||||||| ||||||||||||||||| || ||||| |||| || Sbjct 177 -TACCCGGCTC-CCAAGTTGATCTCGCAAAATGTTGGTCATCGCTCCTCAACATTCACGG 234 Query 174 TTGCAATATCGAAATCTTAAAATCTGCTTTAACCGGTAAGTTTGAAAATGTTGGA-CCAA 232 |||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| || | Sbjct 235 TTGCAATATCGAAATCTTTAAATCTGTTTTAACCGGTAAGTTTGAAAACGTTGGATCC-A 293 Query 233 CATGCTGCAAGGCGTTTACGGAATTGGATGCAAAGTGTTGGCCAAAAATATTTCCGTTGA 292 | ||||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||| Sbjct 294 CGTGCTGCAAGGCTTTTACAGAAGTGGATGCAAAGTGTTGGCCAAAAATGTTTCCGTTGA 353 Query 293 ATCCGTTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATGGCAGGTGCACCCG 352 |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 354 ATCCATTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATCTCAGGTGCACCAG 413 Query 353 CACACACGACACCTCAATTCCCTGTCATCCCTGGGTTTCCTATTCCTGGTTCTCCGGTCG 412 |||||| |||||| |||||||||||||||||||| || | | || | | | | Sbjct 414 CACACAAGACACCGCAATTCCCTGTCATCCCTGG-TT-C-T---CC-GAT-C---G---- 458 Query 413 ATCTCACAAAATGTTTGTCATCACTTGTCAGCGTTCAAGGTTGCGTAACTGAAATCTACA 472 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 459 ATCTCACAAAATGTTTGTCATCACTTGTCAACGTTCAAGGTTGTGTAACTGAAATCTACA 518 Query 473 AATCAGTTTTCACACGGAA-GTTTGATAATGTTGGACCAATGTGTTGCAAGGCGTTG-TC 530 |||||||||||||| |||| || |||||| || ||| ||||| ||||||||||| | Sbjct 519 AATCAGTTTTCACA-GGAAAGTGTGATAACGTAGGATTTATGTGCTGCAAGGCGTTTAT- 576 Query 531 GGCAATGGATGCAAAATGTTGGCCACAAATGTTTCCACTAAATCCGTTCTTCCCTCCTCT 590 ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 577 GGCTGTGGATGCAAAATGTTGGCCAAAAATGTTTCCACTAAATCCGTTCTTCCCTCCTCT 636 Query 591 TCTCAAAAACGAATGTTCTCGCATCAACACAGCCGCTCCTACACACAAATGA 642 |||||||| | ||||||||||||||||||| | |||||||||||||| ||| Sbjct 637 CCTCAAAAATGTATGTTCTCGCATCAACACATCTGCTCCTACACACAAGTGA 688 > AT5G53742.1 | Symbols: | Protein of unknown function (DUF1278) | chr5:21813671-21814018 FORWARD LENGTH=348 Length=348 Score = 390 bits (211), Expect = 7e-108 Identities = 316/363 (87%), Gaps = 21/363 (6%) Strand=Plus/Plus Query 283 TTTCCGTTGAATCCGTTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATGGCA 342 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 4 TTTCCGTTGAATCCATTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATCTCT 63 Query 343 GGTGCACCCGCACACACGACACCTCAATTCCCTGTCATCCCTGGGTTTCCTATTCCTGGT 402 || ||||| ||||||||| ||||||||| | | | | | | | || |||||| Sbjct 64 GGCGCACCAACACACACGAAACCTCAATT--C---C-T---T--G--T-C-ATCCCTGGT 108 Query 403 TCTCCGGTCGATCTCACAAAATGTTTGTCATCACTTGTCAGCGTTCAAGGTTGCGTAACT 462 |||||| ||||||||||||||||||||||||||||||| | |||| |||||||||||||| Sbjct 109 TCTCCGATCGATCTCACAAAATGTTTGTCATCACTTGTTAACGTTGAAGGTTGCGTAACT 168 Query 463 GAAATCTACAAATCAGTTTTCACACGGAA-GTTTGATAATGTTGGACCA-ATGTGTTGCA 520 |||||||||||||||||||||||| |||| ||||| |||||||||| | ||||| |||| Sbjct 169 GAAATCTACAAATCAGTTTTCACA-GGAAAGTTTGGTAATGTTGGAT-ATATGTGCTGCA 226 Query 521 AGGCGTTGTCGGCAATGGATGCAAAATGTTGGCCACAAATGTTTCCACTAAATCCGTTCT 580 ||||||| || || |||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 227 AGGCGTTTTCAGCTGTGGATGTAAAATGTTGGCCACAAATGTTTCCGCTAAATCCGTTCT 286 Query 581 TCCCTCCTCTTCTCAAAAACGAATGTTCTCGC-ATCAACACAGCCGCTCCTACACACAAA 639 |||||||||||||||| || |||||||||| | |||||| ||||| |||||||||||||| Sbjct 287 TCCCTCCTCTTCTCAAGAAGGAATGTTCTC-CTATCAACGCAGCCACTCCTACACACAAA 345 Query 640 TGA 642 ||| Sbjct 346 TGA 348 > AT5G53740.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: synergid; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53905.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21811633-21814908 FORWARD LENGTH=828 Length=828 Score = 139 bits (75), Expect = 3e-32 Identities = 109/125 (87%), Gaps = 4/125 (3%) Strand=Plus/Plus Query 81 AGCCGAGGTG-CTCGTGACATCTCGATTTCCTTCCATTCCTGGTTCTCCAATTGATCTCA 139 |||||||| | ||||||||| | | ||||| ||| ||||||||||||||||||||||||| Sbjct 420 AGCCGAGG-GACTCGTGACACCGCAATTTCTTTCTATTCCTGGTTCTCCAATTGATCTCA 478 Query 140 CAAAATGTTGGTCATCGA-TCTTCAACGTTCAAGGTTGCAATATCGAAATCTTAAAATCT 198 |||||||||||||||| | || ||||| |||||||||| || ||||| ||||| |||||| Sbjct 479 CAAAATGTTGGTCATC-ACTCCTCAACATTCAAGGTTGTAAAATCGAGATCTTTAAATCT 537 Query 199 GCTTT 203 | ||| Sbjct 538 GTTTT 542 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30994468699 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5