BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917090

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G54148.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   124    2e-28


> AT5G54148.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G54150.1); 
Has 104 Blast hits to 102 proteins in 23 species: Archae - 
0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 88; Viruses 
- 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr5:21975785-21977104 
REVERSE LENGTH=1103
Length=1103

 Score =  124 bits (67),  Expect = 2e-28
 Identities = 73/76 (96%), Gaps = 0/76 (0%)
 Strand=Plus/Plus

Query  105  AGATTATCCACATCCAAGACATTTATGTTTGAATTTTCCATTTGGATCAACTCCTAATCC  164
            |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct  240  AGATTATCCACATCCAAGACATTTCTGTTTGAATTTTCCATTTGGATCAACTCCTAATTC  299

Query  165  AAGCCATTGTGATTTG  180
            |||||| |||||||||
Sbjct  300  AAGCCACTGTGATTTG  315


 Score = 56.5 bits (30),  Expect = 8e-08
 Identities = 30/30 (100%), Gaps = 0/30 (0%)
 Strand=Plus/Plus

Query  14   ACGTTAAAAAACTCACCTTTACCGATGATG  43
            ||||||||||||||||||||||||||||||
Sbjct  203  ACGTTAAAAAACTCACCTTTACCGATGATG  232



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7897312107


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5