BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917103

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G54215.1 | Symbols:  | Cysteine-rich protein | chr5:22010063...   394    2e-109


> AT5G54215.1 | Symbols:  | Cysteine-rich protein | chr5:22010063-22010410 
FORWARD LENGTH=252
Length=252

 Score =  394 bits (213),  Expect = 2e-109
 Identities = 240/253 (95%), Gaps = 2/253 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTTCTTCCAAATTGATGTTTACATTCATCGTTGTTGCTATGCTAGCCATTTCCTCT  60
            |||||||| |||| ||||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct  1    ATGGGTTCCTCCAGATTGATGATTACATTCATTGTTGTTGCTATGCTGGCCATTTCCTCT  60

Query  61   GACCTATTCTCTGTTGAAACT-GGAATCAGCGTGCAAGCTGCGCCTCCCACTTGTGGACG  119
            ||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct  61   GACCTTTTCTCTGTTCAAA-TAGGAATCAGCGTGCAAGCTGCGCCTCCCACTTGTGGACG  119

Query  120  AGATTGTACTGAGAAATTCTTGACACAAGACTGCGATAAATATTGTGTAGGTTTGTCTTA  179
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  AGACTGTACTGAGAAATTCTTGACACAAGACTGCGATAAATATTGTGTAGGTTTGTCTTA  179

Query  180  TAAAAGAGGTGTTTGCATACTATCCGAAGGACTTCCTCCAAAAACTTCTACATATCGTTG  239
            ||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct  180  TAAAAAAGGTGTTTGCATTCTATCCGAAGGACTTCCTCCGAAAACTTCTACATATCGTTG  239

Query  240  TTGTTGTTCGTAA  252
            |||||||||||||
Sbjct  240  TTGTTGTTCGTAA  252



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11461046772


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5