BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917111
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54240.1 | Symbols: | Protein of unknown function (DUF1223)... 1347 0.0
> AT5G54240.1 | Symbols: | Protein of unknown function (DUF1223)
| chr5:22022978-22024461 REVERSE LENGTH=1210
Length=1210
Score = 1347 bits (729), Expect = 0.0
Identities = 810/850 (95%), Gaps = 2/850 (0%)
Strand=Plus/Plus
Query 1 ATGGCGCCTCGTCTTTTCGCATGTTTTGGCGTCAAAGGATCTTCAACTTCCACCACTACC 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCGCCTCGTCTTTTCACATGTTTTGGCGTCAAAGGATCTTCAACTTCCACCACCACC 60
Query 61 GGAAAAGGAATTTCCGGTCATAATGCGGCTGTTGTAGCTGCTGATGTTCCGGTAGGTGAT 120
|||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 61 GGAAAAGGTATTTCCGGTCATAACGCGGCTAATGTAGCTGCTGATGTTCCGGTAGGTGAT 120
Query 121 GGACCTGTTCTTGTTCAGCTTTTCTCATCTCAAGGATGTAAAACTTCGCCGGAGGCAGAG 180
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 121 GGACCTATTCTTGTTCAGCTTTTCTCATCTCAAGGATGTAAAACTTCGCCTGAGGCGGAG 180
Query 181 ATGCTTGTATCACGTCTTGGACGTGGTGACTTCGATGGAAAGATCCGTCGAGACGGTGGA 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 ATGCTTGTATCACGTCTTGGACGTGGTGATTTCGATGGAAAGATCCGTCGAGACGGTGGA 240
Query 241 TCTGGTGGTTCTCCTGCGATGGTTTTGGTTTTTCACGTTGATTATTGGGATTATCTTGGA 300
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTAGTGGTTCTCCGGCGATGGTTTTGGTTTTTCACGTTGATTATTGGGATTATCTTGGA 300
Query 301 TGGAAAGATCCTTATGGATCTAGTCAGTGGACCATAAGGCAAAAGGCGTATATCGAGGCG 360
|||||||||||||||||||| |||||||||||| | || |||||||| |||||||||||
Sbjct 301 TGGAAAGATCCTTATGGATCGAGTCAGTGGACCGTGAGACAAAAGGCCTATATCGAGGCT 360
Query 361 TTGAATCAAGATACAATGTTTACTCCACAGTTTGTTGTCCAAGGTCGTGTTCAATTACTT 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 TTGAATCAAGATACAATGTTTACTCCACAGTTTGTTGTTCAAGGTCGTGTTCAATTACTT 420
Query 421 GGGAATGAAGAAGAGACCTTGCTTAAGTCTATTGTTGAAGCTCCTAGGTTTCCTTCTCCG 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 GGGAATGAAGAAGAGTCCTTGCTTAAGTCTATTGTTGAAGCTCCTAGGTTTCCGTCTCCT 480
Query 481 GCGTTTCGGGCCACATTCCAGAGACCAACCTCAGAAACCCTACAAGTATCTCTCACAGGA 540
||||||||||||||||| || |||||||| ||||||||||| |||||||||||||| |||
Sbjct 481 GCGTTTCGGGCCACATTTCAAAGACCAACATCAGAAACCCTTCAAGTATCTCTCACCGGA 540
Query 541 GCTTTGAGGATGAAAGTAGACTCGAGCGGGATCGATATAATGGTGGCGCTATACGAGAAC 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 541 GCTTTGAGGATGAAAGTGGACTCGAGCGGGATCGATATAATGGTGGCGCTATATGAAAAC 600
Query 601 AGTTTAGTGAATGATTGCCCTCGAGGAGAGAACTCAGGAAGAGTTTTGTCCAATGACTAC 660
|||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 GGTTTGGTGAATGATTGCGCTCGAGGAGAGAACTCAGGAAGAGTCTTGTCCAATGACTAC 660
Query 661 GTTGTAAGAAAGCTAGAAAAGTTATGCACGGTTAAAGATTTAACGGCG-AAAAAGACGGT 719
||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||
Sbjct 661 GTTGTAAGAAAGCTAGAAAAGTTATGCACCGTTAAAGATTTAACGG-GAAAAAAGACGGT 719
Query 720 GTCAGAGACGGCTCATTTCACGGTTTGGGATGGATTCAACAGCTCTAAATGTGGAGTCGC 779
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTCAGGGACAGCTCATTTCACGGTTTGGGATGGATTCAACAGCTCTAAATGTGGAGTCGC 779
Query 780 TGTTTTTCTACAGAACACATCTCTTCAAATTTTTGGTACTCAGAGTTTTCAATTGCCTGA 839
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 TGTTTTTCTACAGAACACATCTCTTCAAATTTTTGGTACGCAGAGTTTTCAATTGCCTGA 839
Query 840 TGAGATTTGA 849
||||||||||
Sbjct 840 TGAGATTTGA 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5