BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917125
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54400.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1485 0.0
> AT5G54400.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:22090533-22092126
FORWARD LENGTH=1154
Length=1154
Score = 1485 bits (804), Expect = 0.0
Identities = 855/880 (97%), Gaps = 2/880 (0%)
Strand=Plus/Plus
Query 1 ATGGGGAAGACAACGAATGGAACAAGAGATTGGGCTCAGATCTACGCGATTTACGGGATC 60
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 148 ATGGGGAAGACAACGAATGGAACAAGAGACTGGGCTCAGATCTACGCAATCTACGGGATC 207
Query 61 GAGCAAAAACACACACTCATCTTCCTCATCA-TCAACGCGATTGCTTTCTCTGTTCTCTC 119
|||||||||||||||||||||||||| || | |||||||||||||||||||| | |||||
Sbjct 208 GAGCAAAAACACACACTCATCTTCCTGAT-ACTCAACGCGATTGCTTTCTCTATACTCTC 266
Query 120 CACCGTCTTTTTCATCTACTTTAACCCGATCTGCGTCCTCTTTCAATCGTTTCTCTTCTC 179
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 267 CACCGTCTTTGTCATCTACTTTAACCCGATCTGCGTCTTCTTTCAATCGTTTCTCTTCTC 326
Query 180 TAACGCCGCCGCAGCTAGATTCTCGGCTGGATTCTTTGGAGCTGTTACGGCGATTTCCGC 239
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 327 TAACGCCGCGGCAGCTAGATTCTCGGCTGGATTCTTTGGAGCTGTTACGGCGCTTTCCGC 386
Query 240 CGTGTGTTTGTTTTTCGCGGCGGCGAAttttttttACTCTGCTGTGCCGCTTAGGTATGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 CGTGTGTTTGTTTTTCGCGGCGGCGAATTTTTTTTACTCTGCTGTGCCGCTTAGGTATGA 446
Query 300 GATGGCGCAGAGGATGGTTGGATCTGTTGGAGATTGGTCGAGTGTGAAGACGGCTCTTGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 447 GATGGCGCAGAGGATGGTTGGATCTGTTGGAGATTGGTCGAGTGTGAAGACCGCTCTTGA 506
Query 360 TTTAGGATGTGGTCGTGGGATTTTGCTTAATGCGGTGGCGACGCAGCTCAAGAAAACTGG 419
||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 507 CTTAGGTTGTGGTCGTGGGATTTTGCTTAATGCCGTTGCGACGCAGCTCAAGAAAACTGG 566
Query 420 TAGCTCGGGTCGGGTCGTTGGGTTGGATCGGTCCATGACTACTACTCTCTCTACTCTACG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 TAGCTCGGGTCGGGTCGTTGGGTTGGATCGGTCCATGACTACTACTCTCTCTACTCTACG 626
Query 480 TACAGCTCACATCGAAGGAGTACAAGAGTACGTGACATGCCGTGAAGGAGACGTAAGAAG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 TACAGCTCACATCGAAGGAGTACAAGAGTACGTGACATGCCGTGAAGGAGACGTAAGAAG 686
Query 540 GCTTCCGTTTAGTGATAACTACTTTGACGTGGTGGTTTCAGCCGTGTTTCTTCATACCGT 599
||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| |
Sbjct 687 GCTTCCGTTTAGTGATAACTACTTTGACGTGGTGGTTTCTGCAGTGTTTCTCCATACCAT 746
Query 600 TGGGAAAGAATACGGTCAGAAGACGGTGGAGGCAGCGGCAGAGAGGATGAGAGTACTTGG 659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 747 TGGGAAAGAATACGGTCAGAAGACGGTGGAGGCGGCGGCAGAGAGGATGAGAGTACTTGG 806
Query 660 AGAAGCGGTGAGAGTGTTGAAACCAGGAGGAGTTGGAGTGGTTTGGGACTTAGTGCACGT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 AGAAGCGGTGAGAGTGTTGAAACCAGGAGGAGTTGGAGTGGTTTGGGACTTAGTGCACGT 866
Query 720 GCCGGAGTATGTGCGGCGGTTACAGGAGCTGAGGATGGAGGAGATTAGGGTTTCGAAGCG 779
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 867 GCCGGAGTATGTGCGGCGGTTACAGGAGCTGAGGATGGAGGAGATTAGAGTTTCGAAACG 926
Query 780 AGTCACTGCGTTTATGGTTAAGAGCCATATGGTCTCGTTTAAAAAACCTAGTCAGCATTT 839
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 927 AGTCACTGCGTTTATGGTTAAGAGCCATATGGTCTCGTTTAAGAAACCTAGTCAGCATTT 986
Query 840 TGTGGGATCTGGTGAAGTACGTTTAGATTGGAGATGTTAA 879
||||||||||||||||||||||||||||||||||||||||
Sbjct 987 TGTGGGATCTGGTGAAGTACGTTTAGATTGGAGATGTTAA 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5