BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917142
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51830.1 | Symbols: | pfkB-like carbohydrate kinase family ... 1282 0.0
> AT5G51830.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr5:21069572-21071735 FORWARD LENGTH=1454
Length=1454
Score = 1282 bits (694), Expect = 0.0
Identities = 854/926 (92%), Gaps = 31/926 (3%)
Strand=Plus/Plus
Query 73 GGTGTTTCACTAGCTGAAACACCAGCTTTCAAGAAGGCTCCTGGAGGAGCTCCCGCAAAT 132
||||||||| | |||||| |||||||||||||||| ||||||||||||||||| || |||
Sbjct 255 GGTGTTTCATTGGCTGAAGCACCAGCTTTCAAGAAAGCTCCTGGAGGAGCTCCTGCTAAT 314
Query 133 GTAGCTGTTGGTGTCTCTAGACTTGGACCACTTGGTGGTTCGTCTGCTTTCATTGGAAAG 192
|||||||||||||||||| | | ||||||||| || ||||||||||||||||||
Sbjct 315 GTAGCTGTTGGTGTCTCT--A----G---ACTTGGTGGCTCCTCTGCTTTCATTGGAAAG 365
Query 193 GTTGGTGATGATGAGTTTGGAAGAATGTTAGCTGATATTCTAAGGCTTAACAATGTCGAT 252
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 366 GTTGGTGATGATGAGTTTGGAAGAATGTTAGCTGATATTCTAAGGCTGAACAATGTTGAC 425
Query 253 AACTCTGGGATGAGATTCGACCACAATGCACGGACTGCTCTT-GCGTTTGTTACACTAAG 311
||||||||||||||||||||||| ||||||||||||||| || || |||||||| |||||
Sbjct 426 AACTCTGGGATGAGATTCGACCATAATGCACGGACTGCT-TTGGCCTTTGTTACGCTAAG 484
Query 312 AGGTGATGGAGAGAGGGAGTTTTTGTTCTTCAGGCATCCGAGTGCTGATATGCTTCTTTT 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 AGGTGATGGAGAGAGGGAGTTTTTGTTCTTCAGGCATCCGAGTGCTGATATGCTTCTTTT 544
Query 372 GGAATCTGAGCTTGATAAAGA-CCTCATCCAAAAGGCCAAGATCTTTCACTACGGATCTA 430
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 545 GGAATCTGAGCTTGACAA-GAACCTCATCCAAAAGGCCAAGATCTTTCACTACGGATCTA 603
Query 431 TCAGTTTGATTGAGGAACCTTGCCGTTCTACTCAGCTTGCAGCTATGAAAATTGCTAAAT 490
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 604 TCAGTTTGATTGAGGAACCTTGCCGTTCTACTCAGCTTGTAGCTATGAAAATCGCTAAGG 663
Query 491 CCGCAGGGAGTCTTTTATCTTATGACCCGAATTTGAGATTGCCGTTGTGGCCATCAGAAG 550
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CTGCAGGGAGTCTTTTATCTTATGACCCGAATTTGAGATTGCCGTTGTGGCCATCAGAAG 723
Query 551 AAGCTGCAAGGAAAGAGATCATGAGTATCTGGAATTTAGCTGATGTTATAAAGATTAGCG 610
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 724 AAGCTGCTAGGAAAGAGATAATGAGTATCTGGAATTTAGCTGATGTTATAAAGATTAGCG 783
Query 611 AGGATGAGATTACATTCCTGACCGGTGGTGATGATCCCTATGATGATGATGTGGTGTTGC 670
| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 784 AAGACGAGATAACATTCCTGACCGGTGGTGATGATCCTTATGATGATGATGTGGTGTTGC 843
Query 671 AAAAGCTCTTTCATCCCAATCTTAAGCTTCTTGTTGTTTCA-AAGGACCTAATGGCTG-A 728
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 844 AAAAGCTCTTTCATCCCAATCTTAAGCTTCTTGTTGTTTCAGAAGGACCTAATGGCTGTA 903
Query 729 G-T--T----T-A--A----A--GGCAGAGTTGGTGGAGTAAAAGTGAAGCCAGTTGATA 772
| | | | | | | || ||||||||||||||||||||||||||||||||||
Sbjct 904 GATACTACACTCAGGAGTTTAAAGGTAGAGTTGGTGGAGTAAAAGTGAAGCCAGTTGATA 963
Query 773 CAACCGGTGCAGGAGATGCATTCGTGAGCGGGTTATTGAACAGCTTAGCTTCTGAACTCA 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 964 CAACCGGTGCAGGAGATGCATTCGTGAGCGGGTTATTGAACAGCTTAGCTTCTGATCTTA 1023
Query 833 CTCTTCTCAAGGATGAGAAGAAACTAAGAGAGGCGCTTATATTCGCAAACGCTTGTGGAG 892
|||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct 1024 CTCTTCTCAAGGATGAGAAGAAACTAAGAGAGGCGCTTCTATTTGCAAACGCATGTGGAG 1083
Query 893 CCATTACGGTAACAGAGAGAGGAGCTATTCCGGCCATGCCCAGCATGGATGCTGTTGAAG 952
||||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||| |||
Sbjct 1084 CCATTACAGTAACAGAGAGAGGAGCGATACCGGCGATGCCAAGCATGGATGCTGTTCAAG 1143
Query 953 ATCTTCTGACTTCTACTCGTTCCTAA 978
||||||| |||||||||| ||||||
Sbjct 1144 ATCTTCTTTCTTCTACTCGCTCCTAA 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5