BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917162
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51150.1 | Symbols: DegP6 | DegP protease 6 | chr1:18948370-... 793 0.0
AT5G54745.1 | Symbols: | Trypsin family protein | chr5:2224025... 339 7e-92
> AT1G51150.1 | Symbols: DegP6 | DegP protease 6 | chr1:18948370-18949290
REVERSE LENGTH=660
Length=660
Score = 793 bits (429), Expect = 0.0
Identities = 538/588 (91%), Gaps = 18/588 (3%)
Strand=Plus/Plus
Query 1 ATGTTGTTCCGGTCTG-T--TCATATTGTGGCTAGGTTCAGCAACTCCACGAGCACTTCG 57
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGTTGTTCCGGTCTGTTCATCATATTGTGGCTAGGTTCAGCAACTCCACGAGCACTCCG 60
Query 58 GTTGC-TCGATTTTTCTATTCTCCTTCCCTTCTTCGTCGTGGTTGGTCTTTTAGA-GCTT 115
|| | |||||||||||||||||||||||||||||||||| ||| |||||||| | ||||
Sbjct 61 ATT-CATCGATTTTTCTATTCTCCTTCCCTTCTTCGTCGTCGTTCGTCTTTTA-ATGCTT 118
Query 116 CTTTTATATCTCGTTGTTGTTCTTCTGTGTGCGTTCGGTCTGATATTGATGTGGCTCGAG 175
|||| |||||||||||||||||||| ||| | | | ||| |||||||||||||||
Sbjct 119 CTTTGATATCTCGTTGTTGTTCTTC--TGT--G---AG-C-GATGTTGATGTGGCTCGAG 169
Query 176 ACTCGGTGGTGAAGATCTTTTCCTTTTCTAGAGAGCCAAATGTTGTTCAACCTTGGCAAA 235
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 170 ACGCGGTGGTGAAGATCTTCTCCTTTTCTAGAGAGCCAAATGTTGTTCAACCTTGGCAAA 229
Query 236 CAACTGAGAAAGAATACTCAAGCTCTGGATTTGTAATATCCGGAAGGAGGATTCTTACAA 295
||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 230 CAACTGAGAAAGAATACTCAAGCTCTGGATTTGCAATCTCCGGGAGGAGGATTCTTACAA 289
Query 296 ACTCTCATGTTGCGGGTGATCACCCATACGTGCAAGTGAGAAAGCATGGTTCATCCACTA 355
|| ||||||||| |||||||||| |||| ||||||||||||| ||||||||| ||||||
Sbjct 290 ACGCTCATGTTGTGGGTGATCACTTATACCTGCAAGTGAGAAAACATGGTTCACCCACTA 349
Query 356 AGTACAAAGCAGAAGTTAAAGCGCAT-GGATATGGATGTGACTTAGCTATTTTAAGCATT 414
| |||||||| |||||||||||| | || |||||||||||||||||||| ||| | |||
Sbjct 350 AATACAAAGCTGAAGTTAAAGCGTTTAGG-TATGGATGTGACTTAGCTATCTTAGGTATT 408
Query 415 AATAGTGAAGAGTTTTGGGAGGATATGAATCCTTTGGAGCTCGGAGACATACCTTTTATT 474
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 409 GATAGTGAAGAGTTTTGGGAGGATATAAATCCTTTGGAGCTCGGAGGCATACCTTTTATC 468
Query 475 GGTGAAACTGTCTACGCTTTAGGTTATCCTCGTGGTGGTGATAGCATATCGGTCACAAAA 534
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 469 GGTGAAACTGTCTACGCTTTAGGTTATCCTCGTGGTGGTGATACCATATCGGTCACAAAA 528
Query 535 GGTATTGTAACGAGAGTTGAACCTCAAACGTATTCTCACAGCTCCATT 582
|||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 529 GGTATTGTAACGAGAGTTGAACCTCAAAAGTATTCTCACAGCTCCATT 576
> AT5G54745.1 | Symbols: | Trypsin family protein | chr5:22240256-22241233
REVERSE LENGTH=597
Length=597
Score = 339 bits (183), Expect = 7e-92
Identities = 216/232 (93%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 157 GATATTGATGTGGCTCGAGACTCGGTGGTGAAGATCTTTTCCTTTTCTAGAGAGCCAAAT 216
||||||||| |||||| ||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 112 GATATTGATCTGGCTCAAGACTCGGTGGTGAAGATCTTCTCCTTTTCAAGAGAGCCAAAT 171
Query 217 GTTGTTCAACCTTGGCAAACAACTGAGAAAGAATACTCAAGCTCTGGATTTGTAATATCC 276
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 172 GTTGTTCAACCTTGGCAAACAACTGAGAAAGAATACTCAAGCTCTGGATTTGCAATCTCC 231
Query 277 GGAAGGAGGATTCTTACAAACTCTCATGTTGCGGGTGATCACCCATACGTGCAAGTGAGA 336
|| |||||||||||||||||| ||||||||| |||||||||| ||||| |||||||||||
Sbjct 232 GGGAGGAGGATTCTTACAAACGCTCATGTTGTGGGTGATCACTCATACCTGCAAGTGAGA 291
Query 337 AAGCATGGTTCATCCACTAAGTACAAAGCAGAAGTTAAAGCGCATGG-ATAT 387
|| ||||||||| ||||||||||||||||||||||||||||| ||| ||||
Sbjct 292 AAACATGGTTCACCCACTAAGTACAAAGCAGAAGTTAAAGCGTTTGGGATAT 343
Score = 339 bits (183), Expect = 7e-92
Identities = 219/236 (93%), Gaps = 3/236 (1%)
Strand=Plus/Plus
Query 447 TTTGGAGCTCGGAGACATACCTTTTATTGGTGAAACTGTCTACGCTTTAGGTTATCCTCG 506
||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 343 TTTGGAGCTCGGAGATATACC-TTTATTGGTGAAACTATCTACGCTTTAGGTTATCCTCG 401
Query 507 TGGTGGTGATAGCATATCGGTCACAAAAGGTATTGTAACGAGAGTTGAACCTCAAACGTA 566
|| |||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 402 TGATGGTGATATCATATCTGTCACAAAAGGTATTGTAACGAGAGTTGAACCTCAAAAGTA 461
Query 567 TTCTCACAGCTCCATTGGAATATTAACGATACAAACAGATGCG-GCTATTAACGATGGAA 625
| ||||||||||||||| ||||||||||||||||||||||||| | |||||||| |||||
Sbjct 462 TGCTCACAGCTCCATTGAAATATTAACGATACAAACAGATGCGTG-TATTAACGGTGGAA 520
Query 626 ATAATGGTGGTCCGGTGGTCATGGACAACAAAGTTGCTGGTGTGGTATATGAAAAT 681
| | ||||||||| |||||||||| ||||||||||||||||||||||| |||||||
Sbjct 521 AGAGTGGTGGTCCAGTGGTCATGGGCAACAAAGTTGCTGGTGTGGTATTTGAAAAT 576
Score = 69.4 bits (37), Expect = 1e-10
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 18 TCATATTGTGGCTAGGTTCAGCAACTCCACGAGCACT 54
|||||||||||||||||||||||||||||||||||||
Sbjct 71 TCATATTGTGGCTAGGTTCAGCAACTCCACGAGCACT 107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76706432760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5