BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917191
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55190.1 | Symbols: RAN3, ATRAN3 | RAN GTPase 3 | chr5:22392... 719 0.0
> AT5G55190.1 | Symbols: RAN3, ATRAN3 | RAN GTPase 3 | chr5:22392176-22394172
FORWARD LENGTH=990
Length=990
Score = 719 bits (389), Expect = 0.0
Identities = 493/543 (91%), Gaps = 8/543 (1%)
Strand=Plus/Plus
Query 43 GAACCCACTATTGGTGTTGAGGTCCATCCTCTTGATTTCTTCACTAACTGTGGCAAGATC 102
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 236 GAACCCACTATTGGTGTTGAGGTTCATCCTCTTGATTTCTTCACTAACTGTGGCAAGATC 295
Query 103 CGTTTTTACTGTTGGGATACTGCTGGCCAAGAGAAATTTGGTGGTCTGAGGGATGGTTAC 162
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 296 CGTTTCTACTGTTGGGATACTGCTGGCCAAGAGAAATTTGGTGGTCTTAGGGATGGTTAC 355
Query 163 TATATCCATGGGCAATGTGCCATCATCATGTTTGATGTCACAGCACGTCTGACATACAAG 222
|| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 356 TACATCCATGGACAATGTGCTATCATCATGTTTGATGTCACAGCACGACTGACATACAAG 415
Query 223 AATGTTCCAACATGGCACCGTGATCTTTGCAGGGTCTGTGAAAACATCCCAATTGTTCTT 282
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 416 AATGTTCCAACATGGCACCGTGATCTTTGCAGGGTTTGTGAAAACATCCCAATTGTTCTT 475
Query 283 TGTGGGAATAAAGTTGATGTGAAGAACAGGCAAGTCAAGGCCAAGCAAGTAACATTCCAC 342
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 476 TGTGGGAATAAAGTTGATGTGAAGAACAGGCAAGTCAAGGCCAAGCAGGTAACATTCCAC 535
Query 343 AGGAAGAAGAATCTCCAGTATTACGAAATATCTGCCAAGAGCAACTACAATTTCGAGAAG 402
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 536 AGGAAGAAGAACCTCCAGTATTACGAGATATCTGCCAAGAGCAACTACAACTTCGAGAAG 595
Query 403 CCATTCTTGTACCTTGCTAGAAAATTGGCTGGCGAC-CAAAACCTTCACTTTGTCGAGTC 461
||||||||||||||||||||||| | || || ||| | || | |||||||||| || ||
Sbjct 596 CCATTCTTGTACCTTGCTAGAAAGCTCGCCGGGGACGCTAATC-TTCACTTTGTGGAATC 654
Query 462 ACCCGCGCTTGCTCCACCAGAGGTTCACATCGACCATG-CTGCTCAGCAGAAGAACGAGG 520
||| || |||||||| || || ||||| |||||| || ||||||||||| || | ||||
Sbjct 655 ACCTGCCCTTGCTCCCCCGGAAGTTCAAATCGACT-TGGCTGCTCAGCAGCAGCATGAGG 713
Query 521 CCGATCT--CATTGCGGCGGCAAGTCAGCCACTCCCGGATGATGATGACGATGCTTTCGA 578
| || || || || || |||||||||||||| || ||||| ||||| || | |||||
Sbjct 714 CGGAGCTTGCA--GCAGCAGCAAGTCAGCCACTTCCTGATGACGATGATGACACCTTCGA 771
Query 579 GTA 581
|||
Sbjct 772 GTA 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27980419879
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5