BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg917207 Length=339 Score E Sequences producing significant alignments: (Bits) Value AT5G55135.1 | Symbols: | unknown protein; Has 30201 Blast hits... 488 1e-137 > AT5G55135.1 | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22379921-22380386 FORWARD LENGTH=377 Length=377 Score = 488 bits (264), Expect = 1e-137 Identities = 318/343 (93%), Gaps = 8/343 (2%) Strand=Plus/Plus Query 1 ATGTTGAGAAATTATGTGAACCCAAAATCAATCTCCAAGCATAATAT---AAGATCATGT 57 |||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| Sbjct 39 ATGTTGAGAAATTATGTGAACCCAAAATCAATCTCCAAGCCTAATATAACAACATCATGT 98 Query 58 ATATACTCTTTTTATCTTAAGAGAGGAAGTGCGAGTGGAGGGAGGGAAGAAGGAAGAGCT 117 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 99 ATTTACTCTTTTTATCTCAAGAGAGGAAGTGCGAGTGGAGGGAGGGAAGAAGGAAGAGCT 158 Query 118 CCTTCGACGGCGGAGGAGTTCACAAGACAAGGTTGTA-CTAGCCAAACAGTTGAGAAGGC 176 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 159 TCTTCGACGGCGGAGGAGTTCACAAGACAAGGT-GTTGCTAGCCAAACAGTTGAGAAGGC 217 Query 177 TTTTGACGGAGCTGCGGTTGCGGTAAACGTCTCCGGTGATTCTGAGGAGGATGTGGAGAA 236 |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 218 TTTTGACGGAGCTGCGGTGGCGGTAAACGTCTCCGGTGATTCTGAGGCGGATGTGGAGAA 277 Query 237 GGTGAAAGAGGCGTTTATAGAGAACAAAGACTATAATTATAAGAAGGGAAATGATGATGA 296 |||||||||||||||| |||| || ||||||||||||||||||||| || ||| ||||| Sbjct 278 GGTGAAAGAGGCGTTTTTAGATAAGAAAGACTATAATTATAAGAAGAGACCTGAGGATGA 337 Query 297 TGATAATGATGGTTTCCCTATCAACACGGTTAAAGGAATATAA 339 |||| |||||||| ||||||||||||| ||||||||||||| Sbjct 338 TGAT---GATGGTTTGCCTATCAACACGGCTAAAGGAATATAA 377 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15834340935 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5