BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917207

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55135.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   488    1e-137


> AT5G55135.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22379921-22380386 
FORWARD LENGTH=377
Length=377

 Score =  488 bits (264),  Expect = 1e-137
 Identities = 318/343 (93%), Gaps = 8/343 (2%)
 Strand=Plus/Plus

Query  1    ATGTTGAGAAATTATGTGAACCCAAAATCAATCTCCAAGCATAATAT---AAGATCATGT  57
            |||||||||||||||||||||||||||||||||||||||| ||||||   || |||||||
Sbjct  39   ATGTTGAGAAATTATGTGAACCCAAAATCAATCTCCAAGCCTAATATAACAACATCATGT  98

Query  58   ATATACTCTTTTTATCTTAAGAGAGGAAGTGCGAGTGGAGGGAGGGAAGAAGGAAGAGCT  117
            || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  99   ATTTACTCTTTTTATCTCAAGAGAGGAAGTGCGAGTGGAGGGAGGGAAGAAGGAAGAGCT  158

Query  118  CCTTCGACGGCGGAGGAGTTCACAAGACAAGGTTGTA-CTAGCCAAACAGTTGAGAAGGC  176
             |||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||
Sbjct  159  TCTTCGACGGCGGAGGAGTTCACAAGACAAGGT-GTTGCTAGCCAAACAGTTGAGAAGGC  217

Query  177  TTTTGACGGAGCTGCGGTTGCGGTAAACGTCTCCGGTGATTCTGAGGAGGATGTGGAGAA  236
            |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct  218  TTTTGACGGAGCTGCGGTGGCGGTAAACGTCTCCGGTGATTCTGAGGCGGATGTGGAGAA  277

Query  237  GGTGAAAGAGGCGTTTATAGAGAACAAAGACTATAATTATAAGAAGGGAAATGATGATGA  296
            |||||||||||||||| |||| || ||||||||||||||||||||| ||  ||| |||||
Sbjct  278  GGTGAAAGAGGCGTTTTTAGATAAGAAAGACTATAATTATAAGAAGAGACCTGAGGATGA  337

Query  297  TGATAATGATGGTTTCCCTATCAACACGGTTAAAGGAATATAA  339
            ||||   |||||||| ||||||||||||| |||||||||||||
Sbjct  338  TGAT---GATGGTTTGCCTATCAACACGGCTAAAGGAATATAA  377



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15834340935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5