BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917212

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55170.1 | Symbols: SUM3, SUMO 3, SUMO3, ATSUMO3 | small ubi...   464    2e-130


> AT5G55170.1 | Symbols: SUM3, SUMO 3, SUMO3, ATSUMO3 | small ubiquitin-like 
modifier 3 | chr5:22385307-22386114 REVERSE LENGTH=540
Length=540

 Score =  464 bits (251),  Expect = 2e-130
 Identities = 311/339 (92%), Gaps = 8/339 (2%)
 Strand=Plus/Plus

Query  1    ATGTCTAACTCTCAAGAAGATGACAAGAATCCCATCGACCAAGAACAAGAAGCTCATGTC  60
            ||||||||| |||   |||||||||||   ||||||||||||||||||||||||||||||
Sbjct  44   ATGTCTAACCCTC---AAGATGACAAG---CCCATCGACCAAGAACAAGAAGCTCATGTC  97

Query  61   ATCCTCAAGGTCAAGAGCCAGGATGGAGATGAAGTCTTATTTAAGATCAAGAAAAGCACT  120
            || |||||||||||||||||||||||||| |||||||||||||||| ||| |||||| ||
Sbjct  98   ATTCTCAAGGTCAAGAGCCAGGATGGAGACGAAGTCTTATTTAAGAACAAAAAAAGCGCT  157

Query  121  CCGCTTAGAAAGCTCATGTACGCTTACTGCGACCGCCGAGGTTTGAAATTAGACGCATTC  180
            || |||| |||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct  158  CCACTTAAAAAGCTCATGTATGTTTACTGCGACCGCCGAGGTTTGAAATTAGACGCATTC  217

Query  181  GCTTTCATTTTTGATGGAGCTCGTATCCATGGCAC-GCAGACTCCAGATGAGCTTGATAT  239
            |||||||||||| |||||||||||||   |||| | | ||||||||||||||||||||||
Sbjct  218  GCTTTCATTTTTAATGGAGCTCGTATAGGTGGC-CTGGAGACTCCAGATGAGCTTGATAT  276

Query  240  GGAAGATGGAGATGAGATCGATGCGTGCCGGGCGATGAGTGGTGGTCTACGAGCAAATCA  299
            |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  277  GGAAGATGGAGATGTGATAGATGCGTGCCGGGCGATGAGTGGTGGTCTACGAGCAAATCA  336

Query  300  GCTTCAGTGGTCTTATATGGTTTTCGATCATAATCGGCT  338
            || |||||||||||||||| |||||||||||||| ||||
Sbjct  337  GCGTCAGTGGTCTTATATGCTTTTCGATCATAATGGGCT  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15985144182


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5