BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917228
Length=423
Score E
Sequences producing significant alignments: (Bits) Value
AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 425 1e-118
AT3G43880.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 303 6e-82
AT3G29790.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 279 1e-74
> AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G33528.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:4358652-4360099 REVERSE LENGTH=768
Length=768
Score = 425 bits (230), Expect = 1e-118
Identities = 307/342 (90%), Gaps = 14/342 (4%)
Strand=Plus/Plus
Query 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTTCTGATCTAAGT-AAGTGGTTTTCGAGTTA 59
|||| ||||||| ||||||||||||||||| ||||||||||| || |||| ||||||||
Sbjct 430 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTG 488
Query 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTTGA------GTTTCTTGGAGA 113
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 489 TGTCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGAGTTTGCGTTTCTTGGAGA 548
Query 114 AAGTAAAGGTACAAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATC 173
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 549 AAGTAAAGGTAGAAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGTTATGTCTCATTC 608
Query 174 GCAGGTTGATTTTTC---AGATATAATGAATCTCGTCGTTGACGACAGTGACATAGATGA 230
|||| |||| ||||| |||||||||||||||||||||||| |||||||| ||||||||
Sbjct 609 GCAGATTGAGTTTTCAGAAGATATAATGAATCTCGTCGTTGAGGACAGTGAGATAGATGA 668
Query 231 AGACTGCTGTATTT-GGGAGAAATCTAAGAGAAAAGGTAGCAGTATTTTTCGAGAACCTA 289
|||| | || ||| |||| ||| |||||||||||||||||| | |||||||| ||||||
Sbjct 669 AGACAACAGTCTTTGGGGA-AAACCTAAGAGAAAAGGTAGCAAT-TTTTTCGAAAACCTA 726
Query 290 AGAGAAAGGAAGAGACTACAACAACCTGTGAAGCTGAGCTAA 331
||||||||||||||||||||||||||| ||||||||||||||
Sbjct 727 AGAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAGCTAA 768
> AT3G43880.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G07526.3);
Has 32 Blast hits to 32 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15738173-15738616
REVERSE LENGTH=264
Length=264
Score = 303 bits (164), Expect = 6e-82
Identities = 235/267 (88%), Gaps = 14/267 (5%)
Strand=Plus/Plus
Query 76 ATGTTGGATACAAGTGATGGTCTTGA----G--TTTCTTGGAGAAAGTAAAGGTACAAAG 129
||| |||||||||| |||||||||| | ||||||||||||| |||||||||||||
Sbjct 1 ATGATGGATACAAGCAATGGTCTTGAGTTTGCTTTTCTTGGAGAAATTAAAGGTACAAAG 60
Query 130 GAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGATTTTTCA 189
||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||
Sbjct 61 GAAATGGAATTAGTCTCTTCTGAGGCTAAAGATATGTCTCAGTCGCAAGTTGAGTTTTCA 120
Query 190 GAT-ATA--ATGAATCTCGTCGTTGACGACAGTGACATAGATGAAGACTGCTGTATTTGG 246
|| ||| ||||||||||||||||| || ||||| ||||||||||||||| ||||||||
Sbjct 121 GAAGATATTATGAATCTCGTCGTTGAAGAAAGTGAGATAGATGAAGACTGCAGTATTTGG 180
Query 247 GAGAAATC-TAAGAGAAAAGGTAGCAGTATTTT-TCGAGAACCTAAGAGAAAGGAAGAGA 304
| |||| | ||||||||||||||| |||||||| | || ||| ||| |||||||||||||
Sbjct 181 G-GAAAACCTAAGAGAAAAGGTAG-AGTATTTTCT-GAAAACATAAAAGAAAGGAAGAGA 237
Query 305 CTACAACAACCTGTGAAGCTGAGCTAA 331
|||||||||||| ||||||||||||||
Sbjct 238 CTACAACAACCTATGAAGCTGAGCTAA 264
> AT3G29790.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G33528.1);
Has 40 Blast hits to 40 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:11693095-11693622
REVERSE LENGTH=435
Length=435
Score = 279 bits (151), Expect = 1e-74
Identities = 213/241 (88%), Gaps = 11/241 (5%)
Strand=Plus/Plus
Query 83 ATACAAGTGATGGTCTTGA----G--TTTCTTGGAGAAAGTAAAGGTACAAAGGAAATGG 136
||||||| ||||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 8 ATACAAGCGATGGTCTTGAGTTTGCTTTTCTTGGAGAAAGTAATGGTACAAAGGAAATGA 67
Query 137 AATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGATTTTTC---AGATA 193
|||||||||||||| | ||||||||||||||||| ||||| ||||| ||||| |||||
Sbjct 68 AATTAGTCTCTTCTGATGCTAAAGATATGTCTCAGTCGCAAGTTGAGTTTTCAGAAGATA 127
Query 194 TAATGAATCTCGTCGTTGACGACAGTGACATAGATGAAGACTGCTGTATTT-GGGAGAAA 252
| |||||||||||||||| |||||||| ||||||||||| ||| |||||| |||| |||
Sbjct 128 TTGTGAATCTCGTCGTTGAAGACAGTGAGATAGATGAAGATTGCAGTATTTGGGGA-AAA 186
Query 253 TCTAAGAGAAAAGGTAGCAGTATTTTTCGAGAACCTAAGAGAAAGGAAGAGACTACAACA 312
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 187 CCTAAGAGAAAAGGTAGCAGTATTTTCCGAAAACCTAAGAGAAAGGAAGAGACTACAACA 246
Query 313 A 313
|
Sbjct 247 A 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20056831851
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5