BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917240
Length=2373
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55520.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Kinesin-r... 2230 0.0
> AT5G55520.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Kinesin-related
protein (InterPro:IPR010544); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G26660.1); Has
32425 Blast hits to 20462 proteins in 1550 species: Archae
- 335; Bacteria - 3392; Metazoa - 16996; Fungi - 2645; Plants
- 1561; Viruses - 54; Other Eukaryotes - 7442 (source: NCBI
BLink). | chr5:22488074-22491266 REVERSE LENGTH=2628
Length=2628
Score = 2230 bits (1207), Expect = 0.0
Identities = 1393/1483 (94%), Gaps = 11/1483 (1%)
Strand=Plus/Plus
Query 898 AAGCCTTTAAGTCCTACAGATTCTCTAGCTGCAAGTCTCCAGAGAGGACTGCATATTATA 957
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1019 AAGCCTTTAAGTCCTACAGATTCTCTAGCTGCAAGTCTCCAGAGAGGACTAAATATTATA 1078
Query 958 GACTGTCACCAGA-GGAATTCGCTGTCAAACAGATCGTCTGTTTCCTTCTCGTTCGGGCA 1016
||||||||||| | ||| || |||||||||||||| ||||||||||||||||| |||||
Sbjct 1079 GACTGTCACCA-ACGGAGCTCACTGTCAAACAGATCTTCTGTTTCCTTCTCGTTTGGGCA 1137
Query 1017 TCTCTCTCTGAAGCCTTGCGATGAAAG-C---GATAATCTTAGTGCTTCGGTTAAGCTGT 1072
||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||
Sbjct 1138 TCTCTCTCTGAAGCCTTGCGATG-AAGCCGATGATAATCTTAGTGCTTCGGTTAAATTGT 1196
Query 1073 TACAGGAAGATAGGCCAAAAGAAGGTGGATCATCGATTCTCCTCTGTCTTTCTTGCAGAC 1132
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TACAGAAAGATAGACCAAAAGAAGGTGGATCATCGATTCTCCTCTGTCTTTCTTGCAGAC 1256
Query 1133 AGAAACTTGACCAAGAAGCTGAAGGAGGATATAAGGCAATAGAAGAAGCTTGCGCGGACG 1192
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1257 AGAAACTTGACCAAGAAGCTCAAGGAGGATATAAGGCAATAGAAGAAGCTTGCGTGGACG 1316
Query 1193 AGAAGCATCTCAAGAACATATGTGTGGAGCAGGCTACCAAAATTGAGCAGCTTACTTGTC 1252
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1317 AGAAGCATCTCAAGAACATGTGTGTCGAGCAGGCTACCAAAATTGAGCAGCTTACTTATC 1376
Query 1253 AGTTAGACCAATACAAAGAGAACACTGTT-CGGGAGTCAAGTAAGGTAAGCCAACAACTA 1311
|||||||| |||||||| ||||| || || | ||||||||||||||||| |||||| |||
Sbjct 1377 AGTTAGACGAATACAAAAAGAACGCT-TTGCAGGAGTCAAGTAAGGTAACCCAACAGCTA 1435
Query 1312 ATGAAATCCGATGATGGAGAAGATGAGACTGAGGTCGTGAAGGAAACATATGAGACAAAC 1371
||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1436 ATGAAGTCTGATGATGGAGAAGATGAGACAGAGGTCGTGAAGGAAACATATGAAACAAAC 1495
Query 1372 CAACGTAGTGAAGAGTTTGGGAAAGTAAGGATTGATCTCAATGAAAAGGAAGCTCTTTTA 1431
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1496 CAACGTAGTGAAGAGTTTGGGAAAGTAAGGATTGATCTCAGTGAAAAGGAAGCTCTTCTA 1555
Query 1432 AAGGAGATTGCAGAGCTCAAAAGCAAGCTGCAGCCTACAAAATCAACGGATAATCTGAGA 1491
||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||
Sbjct 1556 AAGGAGATTGCAGAGCTCAAAAGCAAGCTTCAGCCTACAAAATCAACGGATAATGTTAGA 1615
Query 1492 TCTTCTTTGCTGTTACGGTCTTTCCAAATGAGGAAGAGCACTGATTTTACCAAGAACATT 1551
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1616 TCTTCGTTGCTGTTACGGTCTTTCCAAATGAGGAAGAGCATTGATTTTACCAAGAACACT 1675
Query 1552 GAGAACAACAACG-GTGCTATAGAAGAAGAACGTGAAAGGTGGACAGAAATGGAGAGTGA 1610
|||||||||| || | || |||||||||||||||| |||||||||||||||||||||||
Sbjct 1676 GAGAACAACAGCGAG-GCGCTAGAAGAAGAACGTGAGAGGTGGACAGAAATGGAGAGTGA 1734
Query 1611 ATGGATATCTTTAACAGATGATCTAAGGATGGATATTGATAGCCATCGTAGACACGCTGA 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1735 ATGGATATCTTTAACAGATGATCTAAGGATGGATATTGATAGCCATCGTAGACACGCAGA 1794
Query 1671 GGATCTAGAGATAGAGCTCAAAAAGGAGAAAATGGCTACAGAGGAGTTAAATGATGCTCT 1730
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1795 GGATCTAGAGATAGAGCTCAAGAAGGAGAAAATGGCTACAGAGGAGTTAAATGATGCTCT 1854
Query 1731 GAGTAGAGCTATGCTTGGTCACAGTAGATTCATCGAGCAGTACACAGAACTACAGGAGAA 1790
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1855 AAGTAGAGCTATGCTTGGTCACAGTAGATTCATCGAGCAGTACACAGAACTGCAGGAGAA 1914
Query 1791 GTATGATGAATTAGCTGAGAGGCATAGCGTGACGATGGCAGGAATCGTCGATGTGAAGAA 1850
||| |||||||||| |||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 1915 GTACGATGAATTAGATGAGAGGCATAGCGTGACTATGGCAGGAATAGTTGATGTGAAGAA 1974
Query 1851 AGCAGCGGCTAAAGCTGCTCTGAAAGGTCGCCACGGGAAGCGTTTTGCAAAAGCTTTTTC 1910
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1975 AGCAGCGGCTAAAGCTGCTTTGAAAGGTCGCCACGGGAAGCGTTTTGCAAAAGCTTTCTC 2034
Query 1911 AGCTGAGCTTACTGCCATTAGAGCTGAGAAGGAGAAAGAAAGAGATTTCTTGAAGAAGGA 1970
|||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2035 AGCTGAACTTACTGCTATTAGAGCTGAGAAGGAGAAAGAAAGAGAATTCTTGAAAAAGGA 2094
Query 1971 AAACAAGGGCCTCAAAATTCAACTGCGAGATACTGTTGAAGCTGTCCAAGCTGCTGGAGA 2030
||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 2095 GAACAAGGGCCTTAAAATTCAGCTGCGAGATACTGTTGAAGCTGTTCAAGCTGCTGGAGA 2154
Query 2031 ATTACTTGTCAGACTCCGAGAAGCTGAGCAAGCTGTACAATCCTCTGAGGAACGTTTCAG 2090
|||||||||||||||||| |||||||||||||| || ||||||||||||||||||||| |
Sbjct 2155 ATTACTTGTCAGACTCCGTGAAGCTGAGCAAGCAGTTCAATCCTCTGAGGAACGTTTCGG 2214
Query 2091 CTTAATGGAAGAAGAGAATGACAAGTTGAAGCAGCAAATGGAGAAGCTAAAGAGTAAGCA 2150
| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 2215 CATAATGGAAGAAGAGAATGACAAGTTGAAACAGCAAATGGAGAAGTTAAAGAGTAAGCA 2274
Query 2151 CAAATCAGAAATGAGCACAATGAAGCAATATCTTGCAGAAAGCAAATTACCTGGGTCTGC 2210
|||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 2275 CAAAACAGAAATGAGCACAATGAAGCAATATCTAGCAGAAAGCAAATTACCAGGGTCTGC 2334
Query 2211 ACTAGAGGCATGGTTCAAGGAGAATGAGCAAGAGGAAGAAGAACAACATGTATCATCATC 2270
| ||||||||||||||||||||||||||||||| || |||||| | ||||||||||||||
Sbjct 2335 ATTAGAGGCATGGTTCAAGGAGAATGAGCAAGAAGAGGAAGAAGAGCATGTATCATCATC 2394
Query 2271 AGAACACAGAACCGGTGTGGTTAGCTATGACGATTATACAGACGATCAGGCATGGAGAGC 2330
|||||||||||||||||| || ||||||||| | |||||||||||||| ||||||||| |
Sbjct 2395 AGAACACAGAACCGGTGTTGTGAGCTATGACAACTATACAGACGATCAAGCATGGAGATC 2454
Query 2331 TGAGTTTGGAGCCATATATCAAGACCATGACCATCATTACTGA 2373
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2455 TGAGTTTGGAGCCATATATCAAGACCATGACCATCACTACTGA 2497
Score = 791 bits (428), Expect = 0.0
Identities = 549/602 (91%), Gaps = 29/602 (5%)
Strand=Plus/Plus
Query 240 AAACGAATCGACTCAGTTTGAAGCGAAGAGCGTACTCGTTACAAGAGCTAACTCAATGGC 299
||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 362 AAA-GAATCTACTCAGTTTGAAGCGAAGAGTGTACTCGTCACAAGAGCTAACTCAATGGC 420
Query 300 TAATGAGATTACAGAGGAAGATGATTCACTGGGTGACCAGATTCGTGAACTAAAGGAGGA 359
|||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct 421 TAATGAGATTACAGAGGAAGATGATTCATTGGGTCACCAGATTCGTGACCTAAAGGAGGA 480
Query 360 ATTAATAAGAACCAAGTCTGATGGGTACAAACCTGATGGAAGCAAAAATGGGTACTTTGT 419
| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 481 ACTAATAAGAACCAAGTCTGATGGGTACAAACCTGATGGAAGCAAGAATGGTTACTTTGT 540
Query 420 GAGGG-GCAGTTTGAGTCAGTTGAGAAACAGCATCAACAAGTCTATAGTCATGTCGTGTG 478
||||| | ||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 541 GAGGGAG-AGTTTGAGTCAATTGAGAAACAGCATCAACAAGTCTTTAGTCATGTCGTGTG 599
Query 479 AGAACAAAGAAGGTTCAGAAGAAG-AAACAATGTATGAGGATGA-T--GATGATG-TG-A 532
| |||| | ||||||||||| ||| |||||||||||||||| || | ||||||| || |
Sbjct 600 AAAACAGACAAGGTTCAGAA-AAGGAAACAATGTATGAGGAGGAGTATGATGATGATGTA 658
Query 533 -TGGAACTGAGTAAACATATTAGCAAGTTTCACACTTTCTGTGATACTGATGATTTGAGG 591
|||||||||||||||| |||| ||||||||||||| ||||||| ||||||||||||||
Sbjct 659 GTGGAACTGAGTAAACACATTAACAAGTTTCACACTAACTGTGATTCTGATGATTTGAGG 718
Query 592 GATTCTATTCAATCCTCATTTGCAAGTGCTTCAGGCTGTGAAGCAGAGTCAATGAGTGGA 651
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 719 GATTCTATTCAATCCTCCTTTGCAAGTGCTTCAGGCTGTGAAGCAGATTCAATGAGTGGA 778
Query 652 GATGAGATTTGCTCTGTTGATAAACACAAGGATGGGATTCACAAAGATTGTGCCTTGGCT 711
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 779 GACGAGATTTGCTCTGTTGATAAACACAAGGAT------CACAAAGATTGTGCCTTGGCT 832
Query 712 GATTCT---C---------TGGGAAATGGGATTTCAATCAGTTTACCACATCAATCACGT 759
|||||| | |||||||||||||||| ||||||||||||||||||||||||
Sbjct 833 GATTCTGGTCCAAGCGCAGTGGGAAATGGGATTTCTATCAGTTTACCACATCAATCACGT 892
Query 760 ATTCTTGAAGAGCCTCCTTTGTCAGAATCTCCAAAGATTAGGAATTTTAGGAAGAGCGTG 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 ATTCTTGAAGAGCCTCCTTTGTCAGAATCTCCAAAGATTAGGAATTTTAGGAAGAGCGTG 952
Query 820 GC 821
||
Sbjct 953 GC 954
Score = 331 bits (179), Expect = 2e-89
Identities = 228/250 (91%), Gaps = 9/250 (4%)
Strand=Plus/Plus
Query 1 ATGAAAACGATGAAGTCACCAGCGAATATCGGAGAGAATCGCTTCTTAGGAAACCTTTCG 60
|||||||||||||||||||||||||| |||||||||| ||| |||||||||||| |||||
Sbjct 80 ATGAAAACGATGAAGTCACCAGCGAAGATCGGAGAGAGTCGGTTCTTAGGAAACATTTCG 139
Query 61 ACTTCTTCTATCCGAAATCTGCTTCCCAGATCCATCTACGCGAAGCAGAAATCGATCCAA 120
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 140 ACTTCTTCTATTCGAAATCTGCTTCCCAGATCCATCTACGCTAAGCAGAAATCGATTCAA 199
Query 121 AACT-CAGATACTAA---GAGTTTCAGATCCAACGACGAGAACGCTCCTCCTTGTGATCC 176
|| | |||||||||| ||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 200 AA-TGCAGATACTAAAAAGAGTTTCAGATCCAACGACGAGAACTCTCCTCCTTGTGACCC 258
Query 177 AAACATACAAACTAATCATCATCTAAACAAC-A--ACGATTTTCACTTGAAGAAAAAATC 233
|||||||||||| ||||||||||| |||||| | ||||| |||||||||||||||| ||
Sbjct 259 AAACATACAAACAAATCATCATCTCAACAACGACGACGATCTTCACTTGAAGAAAAAGTC 318
Query 234 GCCTCA-AAA 242
|||||| |||
Sbjct 319 GCCTCAGAAA 328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117820679115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5