BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917283
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55960.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 710 0.0
> AT5G55960.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0118 (InterPro:IPR002549);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr5:22662576-22665087 FORWARD LENGTH=2422
Length=2422
Score = 710 bits (384), Expect = 0.0
Identities = 429/451 (95%), Gaps = 2/451 (0%)
Strand=Plus/Plus
Query 457 GACTTAGCGATCTCCGACGTGCTTTTAGCAACAGCGAAAATTGCCTTCTTCCAAGGATGT 516
||||||||||| |||| ||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1648 GACTTAGCGATATCCGGCGTGCTTTTAGCAACAGCGGAAATCGCCTTCTTCCAAGGATGT 1707
Query 517 CTCACTTGGCTATTATTTAGACTATACAATATACATTTCCTTTATATGTCAACCGTTCTC 576
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1708 CTCACTTGGCTATTGTTTAGACTATACAATATACATTTCCTTTACATGTCAACCGTTCTT 1767
Query 577 GCCTTCATCAGCGCTCTGTTACCGATTTTCCCTTACTGGTTCGCGACAATCCCAGCGGCT 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 GCCTTCATCAGCGCTCTGTTACCGATTTTCCCTTACTGGTTCGCGACAATCCCAGCGGCT 1827
Query 637 TTGCAAG-TCGTGCTAGAAGGAAGATACATTGTTGCAGTAACTCTATCTGTGACTCATCT 695
||||| | ||||||||||||||||||| ||||||||||| | | ||||||||||||||||
Sbjct 1828 TTGCA-GCTCGTGCTAGAAGGAAGATATATTGTTGCAGTGATTTTATCTGTGACTCATCT 1886
Query 696 TGTGCTAATGGAGTATGGTGCTTCAGAGATTCAAGATGACATTCCAGGGTCCAATGCTTA 755
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1887 TGTGCTAATGGAGTATGGTGCTTCAGAGATTCAAGATGACATTCCTGGGTCCAATGCTTA 1946
Query 756 CATTACTGGACTAAGTATTATTGGTGGAGTGACTCTGTTTCCTTCTGCTCTCGAGGGAGC 815
| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1947 CCTTACTGGACTAAGTATTATTGGTGGAGTCACTCTGTTTCCTTCTGCTCTAGAGGGAGC 2006
Query 816 GATAATGGGGCCGTTGATAACAACGGTTGTGATTGCTTTGAAGGATCTGTATGCAGAGTT 875
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 2007 GATAATGGGGCCGTTGATAACGACGGTGGTGATTGCTTTGAAGGATCTGTATGCAGAGTT 2066
Query 876 TGTTCTGAATGATCCAAAGAAGATTAGTTAG 906
|||||||||||| ||||||||||| | ||||
Sbjct 2067 TGTTCTGAATGAGCCAAAGAAGATCAATTAG 2097
Score = 625 bits (338), Expect = 3e-178
Identities = 378/398 (95%), Gaps = 0/398 (0%)
Strand=Plus/Plus
Query 60 GATTAAGCATTTTGTGATCGGGCATCCTCAGAACACGTCAACTCCATCCACGGCGCTTAT 119
||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 1179 GATTAAGCATTTTGTGATCGGGCATCCTCAGAACACGTCGACGCCTTCCACGGCGCTTAT 1238
Query 120 TACTCCGTCTCCTTATACAGAGAAGCTCATGAGTTTGAGGACTCGGGTTAAGAATCGAGA 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 AACTCCGTCTCCTTATACAGAGAAGCTCATGAGTTTGAGGACTCGGGTTAAGAATCGAGA 1298
Query 180 ATGGAGTCAGATTTACTCGGAGGTCGATGTGATTTTCAGGGAGCTTATTATCACAAGAGA 239
||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 1299 GTGGAGTCAGATATACTCGGAGGTTGATGTGATCTTCAGGGAGCTTATTATCACTAGAGA 1358
Query 240 AGATTTGGTGGAGAAAGCTAAAGGCTTTGCTGTTAAAGGAATGGATGTATCGCAAAGGGT 299
|||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1359 AGATTTAGTAGAGAAAGCTAAAGGCTTTGCTGTTAAAGGAATGGATGTATCGCAACGGGT 1418
Query 300 TTTCTCAAGCAGCGCATCGGTTGTTGGAGGCGGTGCTAAGTTCGTTTTCTCTATTGGAAA 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 TTTCTCGAGCAGCGCATCGGTTGTTGGAGGCGGTGCTAAGTTCGTTTTCTCTATTGGAAA 1478
Query 360 CTTGATAATCTCGGGAGTAGCAGAGATTTTCAACTTTATCTCTCAGCTAATGGTTTTTAT 419
|||||||||||| |||| ||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 1479 CTTGATAATCTCAGGAGCAGCAGAGTTTTTCAACTTTATCTCTCAGCTAATGATTTTCAT 1538
Query 420 TTGGATTTTATACATTCTAATCACATCAGAATCAGGCG 457
|||| ||||||||||||| |||||||||||||||||||
Sbjct 1539 TTGGGTTTTATACATTCTTATCACATCAGAATCAGGCG 1576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44256283507
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5