BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917298
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56090.1 | Symbols: COX15 | cytochrome c oxidase 15 | chr5:2... 1424 0.0
AT5G56110.1 | Symbols: AtMYB103, ATMYB80, MYB103, MS188 | myb d... 660 0.0
> AT5G56090.1 | Symbols: COX15 | cytochrome c oxidase 15 | chr5:22714518-22716835
FORWARD LENGTH=1720
Length=1720
Score = 1424 bits (771), Expect = 0.0
Identities = 814/835 (97%), Gaps = 2/835 (0%)
Strand=Plus/Plus
Query 391 CATCGAATGTGGGGAAGAGGATTGGGAATCATGTTTGCTTTGCCGTTTTCTTATTTTCTG 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CATCGAATGTGGGGAAGAGGATTGGGAATCATGTTTGCTTTGCCGTTTTCTTATTTTCTG 716
Query 451 CGGAAAGGGTATATTACTCTACGTCTTGGAGTTCAGCTCTCTGGTTTATTTGCGCTTGGT 510
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CGTAAAGGGTATATTACTCTACGTCTTGGAGTTCAGCTCTCTGGTTTATTTGCGCTTGGT 776
Query 511 GCTGGACAAGGTCTCATTGGTTGGTGGATGGTTAAAAGTGGTTTAGAGGAGCCGCCGTCT 570
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 777 GCTGGACAAGGTTTCATTGGTTGGTGGATGGTTAAAAGTGGTTTAGAGGAGCCACCGTCT 836
Query 571 GAATATTCTCAACCGAGGGTAAGCCCATACCGTCTTGCAGCTCACCTGACCTCAGCTTTT 630
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GAGTATTCTCAACCGAGGGTAAGCCCATACCGTCTTGCAGCTCACCTGACCTCAGCTTTT 896
Query 631 GCCATTTATTGTGGACTTTTCTGGACCGCTCTCTCTGTTGTTATGCCTGAACCACCAGCT 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GCCATTTATTGTGGACTTTTCTGGACCGCTCTCTCTGTTGTTATGCCTGAACCACCAGCT 956
Query 691 GAGTCACTGGCTTGGGTTCGGGGAGCAGCTAAAGTGAAGAAGCTTGCATTACCAGTAAGC 750
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 957 GAGTCACTGGCTTGGGTTCGCGGAGCAGCTAAAGTGAAGAAGCTTGCATTACCAGTAAGC 1016
Query 751 TTGATTGTTGGTATCACTACGATTTCAGGAGCATTTGTTGCTGGAAATGATGCTGGTCGT 810
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TTGATTGTTGGTATCACTGCAATTTCAGGAGCATTTGTTGCTGGAAATGATGCTGGTCGT 1076
Query 811 GCATTCAACACATT-CCCAAAAATGGGTGACACATGGATCCCAGATAATATATTTGAGAT 869
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1077 GCATTCAACACATTTCCCAAAA-TGGGTGACACATGGATCCCAGATAATATATTTGAGAT 1135
Query 870 GAAACCACTTTTACGCAACTTTTTCGAGAACACAGCAACTGTTCAGCTTGATCATCGCCT 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GAAACCACTTTTACGCAACTTTTTCGAGAACACAGCAACTGTTCAGCTTGATCATCGCCT 1195
Query 930 TCTTGCAACCACAACGCTAATAGCAATTGGAACAATGTGGTGGTTCACAAGGAAGCTAGA 989
||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1196 TCTGGCAACCACAACATTAATCGCAATCGGAACAATGTGGTGGTTCACAAGGAAGCTAGA 1255
Query 990 CATACATCCAGCCGTTAAAGCTTTGATCGGAAGTACTGTGGGAATGACTGCTGTTCAGGT 1049
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1256 CATACATCCAGCTGTTAAAGCTTTGATCGGAAGTACTGTTGGAATGACTGCTGTTCAGGT 1315
Query 1050 GACATTAGGTGTATTAACGCTTCTGAGTTATGTTCCGGTCTCACTAGGAAGTGCACATCA 1109
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1316 GACATTAGGTGTATCAACGCTTCTGAGTTATGTTCCGGTTTCACTAGGAAGTGCACACCA 1375
Query 1110 AGCAGGAGCTTTAACACTTCTCACTTTGATGCTACTTCTCAATCACACTCTTCGGAGGCC 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 AGCAGGAGCTTTAACACTTCTCACTTTGATGCTACTTCTCAATCACACTCTTCGGAGGCC 1435
Query 1170 ATCGCCTTCTCTTCTCAAATCCCTTCCACAAGTTGCTAAATCAAATTTCAGCTAA 1224
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1436 ATCACCTTCTCTTCTCAAATCTCTTCCACAAGTTGCTAAATCAAATTTCAGCTAA 1490
> AT5G56110.1 | Symbols: AtMYB103, ATMYB80, MYB103, MS188 | myb
domain protein 103 | chr5:22719191-22720664 FORWARD LENGTH=963
Length=963
Score = 660 bits (357), Expect = 0.0
Identities = 385/399 (96%), Gaps = 0/399 (0%)
Strand=Plus/Plus
Query 1 ATGGGTCGGATTCCATGTTGTGAAAAGGAGAATGTGAAGAGAGGACAATGGACTCCTGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTCGGATTCCATGTTGTGAAAAGGAGAATGTGAAGAGAGGACAATGGACTCCTGAA 60
Query 61 GAAGACAACAAATTGGCTTCTTATATTGCTCAACATGGTACTCGTAATTGGCGTCTCATC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGACAACAAATTGGCTTCTTATATTGCTCAACATGGTACTCGTAATTGGCGTCTCATC 120
Query 121 CCTAAGAACGCTGGGTTGCAAAGATGCGGGAAGAGTTGTAGGCTGCGATGGACGAACTAT 180
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 121 CCTAAGAATGCTGGGTTGCAAAGATGTGGGAAGAGTTGTAGGCTGCGATGGACAAACTAT 180
Query 181 TTGCGTCCGGATTTGAAACACGGCCAGTTCTCGGAGACTGAGGAACATATCATTGTCAAG 240
||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct 181 CTGCGTCCGGATTTGAAACATGGCCAGTTCTCGGAGGCTGAAGAACATATCATTGTCAAG 240
Query 241 TTTCACTCTGTTCTTGGTAACCGGTGGTCGTTGATTGCGGCGCAACTTCCTGGTCGAACG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 TTTCACTCTGTTCTTGGTAACCGGTGGTCGTTGATTGCGGCGCAACTTCCTGGTCGGACA 300
Query 301 GACAACGATGTGAAAAACTATTGGAACACGAAGCTGAAGAAGAAGTTGTCGGGAATGGGA 360
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GACAACGATGTGAAAAATTATTGGAACACGAAGCTGAAGAAGAAGTTGTCAGGAATGGGA 360
Query 361 ATAGATCCAGTGACCCACAAGCCTTCCTCGCATCGAATG 399
|||||||| |||||||||||||||| |||||||| ||||
Sbjct 361 ATAGATCCGGTGACCCACAAGCCTTTCTCGCATCTAATG 399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5