BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917300

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G09270.1 | Symbols: IMPA-4 | importin alpha isoform 4 | chr1...   139    1e-32


> AT1G09270.1 | Symbols: IMPA-4 | importin alpha isoform 4 | chr1:2994369-2998222 
FORWARD LENGTH=2143
Length=2143

 Score =  139 bits (75),  Expect = 1e-32
 Identities = 90/97 (93%), Gaps = 1/97 (1%)
 Strand=Plus/Plus

Query  109  agaCAGGGGTCGATGCCGATGAGGCGAGGCGGAGGAGAGAGGACAATCTCGTCGAGATTA  168
            ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  187  AGACAGGCGTCGATGCCGATGAGGCCAGGCGGAGGAGAGAGGACAATCTCGTCGAGATTA  246

Query  169  GaaaaaaaCAAGCGTGATGATAGTCTCCTCACGAAGC  205
            | ||||| ||||||||| |||||||| |||| |||||
Sbjct  247  GGAAAAA-CAAGCGTGAGGATAGTCTTCTCAAGAAGC  282



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11611850019


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5