BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917311
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56190.2 | Symbols: | Transducin/WD40 repeat-like superfami... 2152 0.0
> AT5G56190.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:22742032-22745177 FORWARD LENGTH=1777
Length=1777
Score = 2152 bits (1165), Expect = 0.0
Identities = 1288/1348 (96%), Gaps = 5/1348 (0%)
Strand=Plus/Plus
Query 1 ATGTCTGTTTAAAATGGTGATGATCTTGAAGATGAATATATGGCTGATGAGTATGACATG 60
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 ATGTCTGATTACAATGGTGATGATCTTGAAGATGAATATATGGCTGATGAGTATGACATG 225
Query 61 GATGATCTCGAGGATGATATGAATGCCGAGTTTGATGGAAGAGAGATCGATGCTTCTTCT 120
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 226 GATGATCTCGAGGATGATATGAATGCCGCGTTTGATGGAAGAGATATCGATGCTTCT--- 282
Query 121 GATTCTGAAGTCGAAGATTTCGACCAATTGAACAAGGCTGCAGATACTTCTGCTGCACAA 180
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 283 GATTCCGAAGTCGAAGATTTCGATCAATTGAACAAGGCTGCAGATACTTCTGCTGCTCAA 342
Query 181 GCACGAAATGGGAAGGATATTCAGGGTATACCGTGGGATAGACTTAA-CATTACTAGAAA 239
||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 343 GCACGGAATGGGAAGGATATTCAGGGTATACCGTGGGATAGTCTTACTC-TTACTAGAAA 401
Query 240 AGAGTACAGAAAAACTAGGCTAGAACAGTATAAAAACTATGAAAATATACCCAATTCGGG 299
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 402 AGATTACAGAAAAACTAGGCTAGAACAATATAAAAACTATGAAAATATACCCAATTCTGG 461
Query 300 TGAGGAATCTGCCAAGAAATGTATGAATACTGAGAAAGGCAGCTCTTTCTATGAGTTCAG 359
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 462 TGATGAATCTGCCAAGAAATGCATGAATACTGAGAAAGGCAGCTCTTTCTATGAGTTCAG 521
Query 360 GAGGAATTCTAGATCAGTGAGATCAACAATTCTCCATTTTCAGTTGAGGAATTTGGTCTG 419
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 522 AAGGAATTCTAGATCCGTGAGATCAACGATTCTCCATTTTCAGTTGAGGAATTTGGTCTG 581
Query 420 GGCTACCTCAAAACATGATGTTTATCTATTGTCCAACTACTCCATCAGCCACTGGTCTTC 479
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 582 GGCTACCTCAAAACACGATGTTTATTTATTGTCCAACTACTCCATCAGCCACTGGTCTTC 641
Query 480 TTTAACAGCTTGTAGGAATGAAATTCTTAACGTTAAAGGTCATGTGGCTCCGTCTGAGAA 539
||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 TTTGACAGGTTGTAGGAGTGAAATTCTTAACGTTAAAGGTCATGTGGCTCCGTCTGAGAA 701
Query 540 ACATCCTGAGAGTCTGTTGGAAGGATTTACAGAGACTCAAGTTAGCACTCTTGCAGTAAA 599
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 ACATCCCGAGAGTTTGTTGGAAGGATTTACAGAGACTCAAGTTAGCACTCTTGCAGTAAA 761
Query 600 AGAAAGGCTGCTAGTTGCTGGTGGATTTCAAGGAGAAATCATTTGCAAGCATCTCGATAG 659
||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 762 AGAAAGGCTACTAGTTGCTGGTGGATTCCAAGGAGAACTCATTTGCAAGCATCTCGATAG 821
Query 660 ACCTGGTGTGAGCTTCTGCTCACGCACAACTTATACCGAAAACGCTATCACCAATGCTGT 719
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 822 ACCTGGTGTGAGCTTCTGCTCACGCACAACTTACACCGAAAACGCTATCACCAATGCAGT 881
Query 720 AGATATATATAGAAACTCCAGCGGCGCACTTCATTTCATGGCCTCAAATAATGACTGTGG 779
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 882 AGATATATATAGAAACTCCAGCGGCGCACTGCATTTCATGGCCTCAAATAATGACTGTGG 941
Query 780 AGTCAGAGACTTTGACATGGAGAGATATCAGCTTGTCCAACTCTTCCATTATCTATGGCC 839
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 942 AGTCAGAGACTTTGACATGGAGAGATATAAGCTTGTCCAACTCTTCCGTTATCTATGGCC 1001
Query 840 CGTCAATCATAGCTCCCTAAGTCCTGACGGGAAACTAGTAGCAGTCGTTGGAGATGACCC 899
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1002 CGTCAATCATAGTTCCCTAAGTCCTGATGGAAAACTAGTAGCAGTCGTTGGAGATGACCC 1061
Query 900 AGATGGTCTACTGGTAGACGCAAGCAACGGACGGACAATCGGGACGCTAAAAGGTCACTT 959
||||||||||||||||||| |||| ||||||| ||| |||||||||||||||||||||||
Sbjct 1062 AGATGGTCTACTGGTAGACACAAGTAACGGACAGACGATCGGGACGCTAAAAGGTCACTT 1121
Query 960 AGATTATTCATTTGCATCAGCTTGGCATCCAAATGGTGTAACATTTGCCACAGGAAACCA 1019
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1122 AGATTATTCATTTGCATCAGCTTGGCATCCAAACGGTGTAACATTTGCCACAGGAAACCA 1181
Query 1020 AGACAAGACCTGTCGTATTTGGGACACAAGGAAACTCTCAGAATCAGTCGCTGTCCTAAA 1079
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1182 AGACAAGACCTGTCGTATTTGGGACACAAGGAAACTCTCGGAATCAGTCGCTGTCCTAAA 1241
Query 1080 AGGTAACCTCGGAGCCGTACGATCCATTAGGTTCACATCTGACGGACGGTACGTTGCAAT 1139
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1242 AGGTAACCTTGGAGCCGTACGGTCCATTAGGTTCACATCTGACGGACGGTACGTTGCCAT 1301
Query 1140 GGCCGAGCCAGCAGATTTTGTCCATATCTATGACATAAAAGCAGGCTACAAAAAGGAGCA 1199
|||||||||||||||||| || ||||||||||||| |||| |||| ||||||||||||||
Sbjct 1302 GGCCGAGCCAGCAGATTTCGTTCATATCTATGACACAAAATCAGGATACAAAAAGGAGCA 1361
Query 1200 AGAGATTGATTTCTTTGGAGAGATATCTGGGATTTCGTTTAGTCCAGATACAGAATCTCT 1259
|||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct 1362 AGAGATTGATTTCTTTGGAGAGATTTCTGGGATATCGTTTAGCCCAGATACTGAATCTCT 1421
Query 1260 CTTCATCGGTGTTTGGGACCGGACTTATGGAAGTCTCTTGGAGTATGGTCGAACCAGAGA 1319
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 CTTCATCGGTGTTTGGGACAGGACTTATGGAAGTCTCTTGGAGTATGGTCGAACCAGAGA 1481
Query 1320 CTACACTTATCTCGATTCATTACTTTGA 1347
||||||||||||||||||||||||||||
Sbjct 1482 CTACACTTATCTCGATTCATTACTTTGA 1509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66314919945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5