BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917332
Length=285
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56369.1 | Symbols: | Defensin-like (DEFL) family protein |... 390 3e-108
> AT5G56369.1 | Symbols: | Defensin-like (DEFL) family protein
| chr5:22835446-22835823 FORWARD LENGTH=282
Length=282
Score = 390 bits (211), Expect = 3e-108
Identities = 262/286 (92%), Gaps = 5/286 (2%)
Strand=Plus/Plus
Query 1 ATGACAAAGATAAGTTTCTTCTTAGCTACGTATGCAACCATCTACATCATATTATCACCT 60
||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGACAAAGATCGGTTTCTACTTAGCTACATATGCAACCATCTACATCATATTATCACCT 60
Query 61 GGGCTACTAGCCACGGCGGCGCGTGAGAATCTGCATCACCAATGCTTTTGCGAGTCACCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGGCTACTAGCCACGGCGGCGCGTGAGAATCTGCATCACCAATGCTTTTGCGAGTCACCA 120
Query 121 AGCACGTGTTCTTGCTTCCCACC-ATCACCGACACCGTCAACATCTGTGAATAAGCCACG 179
|||| |||| |||||||||| | | |||| |||||| ||||||||||||||||| ||||
Sbjct 121 AGCAAGTGTGATTGCTTCCCAACGA-CACCAACACCGCCAACATCTGTGAATAAGTCACG 179
Query 180 GAAAAGCGCCGGACCACTATGTTTGTCAGACGGTGATTGCAAACATTTTTGTCGTCCGAA 239
|||| | || |||||||||||| | ||||||||||||||||||||||||||||||| ||
Sbjct 180 GAAA-G-GC-GGACCACTATGTACGACAGACGGTGATTGCAAACATTTTTGTCGTCCTAA 236
Query 240 AAAAGGTGTTTGCAACATTGATTTCGAAACGTGTGTTTGTCACTGA 285
|||||||||||| ||||| ||||||||||||||| ||||||| |||
Sbjct 237 AAAAGGTGTTTGTAACATCGATTTCGAAACGTGTATTTGTCAATGA 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13119882489
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5