BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917385

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56920.1 | Symbols:  | Cystatin/monellin superfamily protein...   241    3e-63


> AT5G56920.1 | Symbols:  | Cystatin/monellin superfamily protein 
| chr5:23024896-23025915 FORWARD LENGTH=938
Length=938

 Score =  241 bits (130),  Expect = 3e-63
 Identities = 167/185 (90%), Gaps = 2/185 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGGACTCTGGTTTGATAGAGGTTAACTGTCACCGGCCTCAAAAGATTCCAAAGTTG  60
            |||| |||||||  |||||| |||||||||| || ||||||| |||||||||| ||||||
Sbjct  105  ATGGCGGACTCTCTTTTGATGGAGGTTAACTATCGCCGGCCTGAAAAGATTCCGAAGTTG  164

Query  61   GACGAAGATTGCGAAGGATCGAAATCTTCCTCGAAACAGCGCGTGATCAAGTGGGGAA-A  119
            ||||||||||| ||||||||| ||||||| ||||||||||||||| |||||||||||| |
Sbjct  165  GACGAAGATTGTGAAGGATCGGAATCTTCGTCGAAACAGCGCGTGGTCAAGTGGGGAACA  224

Query  120  GGGGGAAGATGACGAATACTTACGACAGTATTTGTTGTTTCACTATCAATTCGAGAAAAC  179
             | ||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct  225  -GCGGAAGATGATGAATACTTGCGACAGTATTTGTTGTTTCACTATCAATTCCAGAAAAC  283

Query  180  TCAGG  184
            |||||
Sbjct  284  TCAGG  288



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12064259760


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5