BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917392
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56960.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2028 0.0
> AT5G56960.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
family protein | chr5:23038703-23041174 REVERSE LENGTH=1401
Length=1401
Score = 2028 bits (1098), Expect = 0.0
Identities = 1306/1405 (93%), Gaps = 20/1405 (1%)
Strand=Plus/Plus
Query 1 ATGATGCATTTGATTTTGAGCTGCAGCTATTTGATATCAATGGATGGATATTACAATGAA 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGATGCATTTGATTTTGAGCTGCAGCTATTTAATATCAATGGATGGATATTACAATGAA 60
Query 61 GCTTCTGAAGAACcttcttcttcttcttcttcCGGAAGTTTAGCTAGAAGCTTATTCCAT 120
|||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||
Sbjct 61 GCTTCTGAAGAACCTTCTTCGTCTTCTTCTTCTGGAAGTTTAGCTAGGAGCTTGTTCCAT 120
Query 121 GAGTATCGCCAATCCGTTATCCCACTCCAAAATGGGCATGTACCAAGCATGGCGTTCATG 180
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 121 GAGTATCGCCAATCCGTTATCCCGCTCCAAAATGGGCATGTGCCAAGCATGGCGTTCATG 180
Query 181 AACAATCTTCCATACGTAGAGATTCGACCACAAGAGATTCAAAGACTTGCTTTTAACGAC 240
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 181 AACAATCTTCCATACGTAGAAATTCGACCACAAGAGAGTCAAAGACTTGCTTTTAACGAC 240
Query 241 GCACAACGTCTATTCTATCAGATGAAAATAGAAGCAAGTCTTCGAGAATGGTTCCCTGAA 300
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 ACACAACGTCTCTTCTATCAGATGAAAATTGAAGCAAGTCTTCGAGAATGGTTCCCTGAA 300
Query 301 GATTTCAATAGAAAGTCTTCTCCGGTAAACTCCGACTATCTCCGGCCACCGCATCATCCA 360
||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| ||||
Sbjct 301 GATTTCAATAGAAAGTCTTCTCCGGCAAACTCCGATTATCTCCGGCCACCTCATTATCCC 360
Query 361 TCTTCATCTTCTTCTTCTCTTAGTCCCAACAACGTCTCTGAATATTCCTCTCTTTTATTC 420
|||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| |||
Sbjct 361 TCTTCATCGTCTTCTTCTCTTAGTCCCAACAACATCTCCGAATATTCCTCTCTTTTGTTC 420
Query 421 CCACTCATCCCTAAACCTTCAACGACGACTGAAGCCGTTAACGTTCCGGCACTTCCACC- 479
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 421 CCACTCATCCCTAAACCTTCAACGACGACTGAGGCCGTTAACGTTCCGGTACTTCCACCG 480
Query 480 CTTAGCTCCGGTCAATATGATCCATCAACAACAACAAGAGCCTTTGTTCCGTAACCGTGA 539
| |||||||| ||||||||||||||| ||| || ||||||||||| |||||||||||| |
Sbjct 481 C-TAGCTCCGATCAATATGATCCATCCACAGCATCAAGAGCCTTTATTCCGTAACCGTCA 539
Query 540 ACGTGAGGAAGAAGCAATGACAAAAGCTATCTTAGCGGTTTTAACGGGGCCATCAAGTCC 599
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 540 ACGTGAGGAAGAAGCAATGACGCAAGCAATCTTAGCGGTTTTAACGGGGCCATCAAGTCC 599
Query 600 TCCGTCTACTTCTTCCTCGCCACAGCGTAAAAGAAGAGCCACCGCTTTTAATAGATATTA 659
|||||| |||||||||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct 600 TCCGTCAACTTCTTCCTCGCCGCAGCGTAAAGGAAGAGCCACCGCTTTTAAGAGATATTA 659
Query 660 CTCCATGATTAGTGGCCACGGTAGAGCGCCGCTGCCGAGT-TTACGGAAGCAAAGCATGA 718
|||||||||||||| || ||||||||| ||||| |||||| || ||||||||||| ||||
Sbjct 660 CTCCATGATTAGTGACCGCGGTAGAGCCCCGCTTCCGAGTGTT-CGGAAGCAAAGTATGA 718
Query 719 TGAAAAGAGCGATTTCCTTCTACAATAGGCTTAACATTTACCAGAGAGAGCGTTTTACTA 778
||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 719 TGACAAGAGCGATGTCCTTCTACAATAGGCTTAACATTAACCAGAGAGAGCGTTTTACTA 778
Query 779 GGGAAAACGCTACTACACACGGCGAAGGAAGTGGTGGAAGCAGCGGGGGTGGACGTTTTA 838
||||||||||||||||||||||||| ||||| |||||||| | ||||||||||||| ||
Sbjct 779 GGGAAAACGCTACTACACACGGCGAGGGAAGCGGTGGAAGTGGAGGGGGTGGACGTTATA 838
Query 839 CCAGCGGGCCAAGCGCAACGCAATTGCATCATATGATATCGGAGAGGAAACGGCGAGAGA 898
| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 839 CTAGCGGGCCAAGCGCAACGCAACTGCAACATATGATATCGGAGAGGAAACGGCGAGAGA 898
Query 899 AGCTTAACGAGAGCTTTCAAGCATTGAGATCTCTCCTTCCTCCGGGAACTAAGAAAGATA 958
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 899 AGCTTAATGAGAGCTTTCAAGCATTGAGATCTCTCCTTCCTCCCGGAACTAAGAAAGATA 958
Query 959 AAGCATCGGTCCTCTCCATTGCAAGAGAGCAACTATCTTCTTTGCAAGGCGAGATTTCGA 1018
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 959 AAGCATCGGTCCTCTCCATTGCAAGAGAGCAACTATCTTCTTTGCAAGGTGAGATTTCGA 1018
Query 1019 AACTACTAGAAAGAAACCGGAAGCTGGAGGCGAAGCTAGCCGGAGAAAGAGATATTAAAA 1078
|||||||||| ||||| ||| || | ||||| |||||||| ||||||||||| ||| |||
Sbjct 1019 AACTACTAGAGAGAAATCGGGAGGTAGAGGCAAAGCTAGCAGGAGAAAGAGAGATTGAAA 1078
Query 1079 ATGATTTACTACCC-AATGAGAGGTTTAACGTTCATATAAGTCATATATCC-GAATCAAC 1136
||||||||| |||| || |||||||||||||||| |||||| |||||| || ||||||||
Sbjct 1079 ATGATTTACGACCCGAA-GAGAGGTTTAACGTTCGTATAAGACATATA-CCTGAATCAAC 1136
Query 1137 ATCAAGAGAGAGGATTTTGGATCTAAGAGTTGTTCTAAGAGGAGACAGCATTAGGGTTGA 1196
||| |||||||||| |||||||||| ||||||||||||| ||||||| ||||||||||||
Sbjct 1137 ATCTAGAGAGAGGACTTTGGATCTACGAGTTGTTCTAAGGGGAGACATCATTAGGGTTGA 1196
Query 1197 TGATTTGATGATAAGACTTCTTGAATTCTTGAAGCAAATCAACAATGTGAGCTTAGTATC 1256
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1197 TGATTTGATGATAAGACTTCTCGAATTCTTGAAGCAAATCAACAATGTGAGCTTAGTGTC 1256
Query 1257 AATCGAAGCTCGAACTCGAGCTAG-G--GA------TACTTCGGTTGTTCTTGTGA---G 1304
||||||||||||||||| |||||| | || |||||| |||||||||||| |
Sbjct 1257 AATCGAAGCTCGAACTCTAGCTAGAGCAGAGGGGGATACTTCAATTGTTCTTGTGATCAG 1316
Query 1305 CTTAAGGCTCAAGATTGAGGGTGAATGCGACGAATCAGCCTTCCAAGAAGCAGTCAGAAG 1364
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1317 CTTAAGGCTCAAGATTGAGGGTGAATGGGACGAATCAGCCTTCCAAGAAGCAGTCAGAAG 1376
Query 1365 GGTTGTTGCTGACTTGGCTCACTGA 1389
|||||||||||||||||||||||||
Sbjct 1377 GGTTGTTGCTGACTTGGCTCACTGA 1401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68423342835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5