BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917419

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G57170.2 | Symbols:  | Tautomerase/MIF superfamily protein |...   387    5e-107


> AT5G57170.2 | Symbols:  | Tautomerase/MIF superfamily protein 
| chr5:23162071-23163209 REVERSE LENGTH=775
Length=775

 Score =  387 bits (209),  Expect = 5e-107
 Identities = 281/315 (89%), Gaps = 8/315 (3%)
 Strand=Plus/Plus

Query  1    ATGTCCACTTTAAATCTCTTCACTAACGTACCAGCCGACTCCTG-CATTTGCTCTGACAT  59
            ||| ||||||| ||||||||||||||| |||||| |||| || | || |||||| |||||
Sbjct  70   ATGCCCACTTTGAATCTCTTCACTAACATACCAGTCGACGCC-GTCACTTGCTCAGACAT  128

Query  60   CCTCAAGGACGTTACTAAGGCCGTCGCTAAAATCATCGGCAAACCTGAATCC-AGTGTGA  118
            |||||||||||  ||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct  129  CCTCAAGGACGCCACTAAGGCCGTCGCTAAAATCATCGGCAAACCTGAATCCTA-TGTGA  187

Query  119  TGATACTGCTTAACAGCGGAGTGCCCATTGCATTTGCCCGTAGCGAGGAACCTGCTGCAT  178
            |||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||
Sbjct  188  TGATACTGCTTAACAGTGGAGTGCCCATTGCATTTGCCGGTACCGAGGAACCTGCTGCAT  247

Query  179  ATGGACAATTGGTATCTATAGGGGGATTAGGACCTGACGTAAACGGGAAGCTTAGCGAGA  238
            ||||| ||||| ||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct  248  ATGGAGAATTGATATCTATTGGGGGATTAGGACCTGGCGTAAACGGGAAGCTTAGCGAGA  307

Query  239  AGATATCGGAAATTCTCCAAGTTAAGCTCGACATAG-CTAGCT-TCCGCTGTTATATCAG  296
             |||||| || ||||||||| ||||||||  ||||| | |||| || ||| |||||||| 
Sbjct  308  CGATATCTGAGATTCTCCAAATTAAGCTCTCCATAGAC-AGCTCTC-GCTTTTATATCAA  365

Query  297  TTTCTACGAGTCTCC  311
             |||||||| |||||
Sbjct  366  ATTCTACGATTCTCC  380



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16286750676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5