BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917423
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58350.1 | Symbols: WNK4, ZIK2 | with no lysine (K) kinase 4... 676 0.0
> AT5G58350.1 | Symbols: WNK4, ZIK2 | with no lysine (K) kinase
4 | chr5:23584789-23587801 FORWARD LENGTH=2552
Length=2552
Score = 676 bits (366), Expect = 0.0
Identities = 438/472 (93%), Gaps = 7/472 (1%)
Strand=Plus/Plus
Query 1 CTTGCGGATAGATATCTGAGCAATCAAGTCATGGTCTCGGCAGATCTTGGAAGGGCTTGT 60
|||||||||||||||| ||||||||||||| ||| ||||||| |||||||||||||| ||
Sbjct 1058 CTTGCGGATAGATATCCGAGCAATCAAGTCCTGGGCTCGGCAAATCTTGGAAGGGCTAGT 1117
Query 61 TTATAT-CACGGGCATGACCCTCCTGTTATCCATAGAGACCTCAAGTGTGATAATAATAT 119
|||| | |||| ||| |||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1118 TTATCTCCACGAGCACGACCCTCCTGTTATCCATAGAGACCTTAAGTGTG---ATAATAT 1174
Query 120 CTTTGTTAATGGGCATCTTGGACAAGTTAAAATTGGCGATCTTGGCCTTGCGAGGATGCT 179
|||||| |||||||||||||||||||| |||||||| |||||||| ||||| || |||||
Sbjct 1175 CTTTGTGAATGGGCATCTTGGACAAGTCAAAATTGGTGATCTTGGTCTTGCAAGAATGCT 1234
Query 180 GCGGGACTGCGACTCGGCCCATAGCGTCA-T--CACTCCTGAGTTCATGGCACCAGAATT 236
|||||||||| |||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 1235 GCGGGACTGCCACTCGGCCCATAGCATCATTGGCACTCCTGAGTTCATGGCACCAGAATT 1294
Query 237 ATATGAGGAGAACTATAATGAACTCATTGACGTATACTCCTTTGGTATGTGCTTTTTGGA 296
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1295 ATATGAGGAGAACTATAATGAACTCATTGACGTATATTCCTTTGGTATGTGCTTTTTGGA 1354
Query 297 GATGATCACCTCTGAGTTCCCGTATAGTGAGTGCAACAATCCGGCACAGATTTACAAGGA 356
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1355 GATGATCACCTCTGAGTTCCCGTATAGTGAGTGCAACCATCCGGCACAGATTTACAAGAA 1414
Query 357 AGTTGTCGCGGGAAAGCTACTAGGAGCCTTTTACAGAGTTGGAGACATCGAGGCACAGAG 416
|||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1415 AGTTGTTGGGGGAAAGCTACCAGGAGCATTTTACAGAGTTGGAGACATCGAGGCACAGAG 1474
Query 417 GTTCATCGGGAAACGCCTTGTGTTTGCCTCAAAGAGAGTATCAGCAAAAGAA 468
||||||||||||| |||| |||| ||||||||||||||||||||||||||||
Sbjct 1475 GTTCATCGGGAAATGCCTCGTGTCTGCCTCAAAGAGAGTATCAGCAAAAGAA 1526
Score = 372 bits (201), Expect = 3e-102
Identities = 293/337 (87%), Gaps = 8/337 (2%)
Strand=Plus/Plus
Query 469 TCCTGGATGGTATACGCGAGCGGTGCTGGGAATCCAAAGCACTTCTTGAACGAGAATGAA 528
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1560 TCCTGGATGGTATACACGAGCGGTGCTGGGAATCCAAAGCCCTTCTTGAACGAGAATGAA 1619
Query 529 ATGGCCACACTGAAGTTGGAAGATGATGAGTTAGGAAGGACCCAGACGACCACCACACCA 588
|||| ||||||||||||||||||||||||||| ||||||| ||| | ||| | |
Sbjct 1620 ATGGACACACTGAAGTTGGAAGATGATGAGTT---AAGGACCGAGATGTCCATCGCTGGG 1676
Query 589 AAGCTGAACGCTGAAGATAACACAATCTAT-TTGAGAGTACAAATCGCAGATGA-AA--A 644
|||||| |||||||||||||| |||| || | || ||||||||||||| |||| ||
Sbjct 1677 AAGCTGGGCGCTGAAGATAACAAAATCGATCTGGA-AGTACAAATCGCATATGATAATGG 1735
Query 645 TATGGCAAATAACGTGTTCTTTCCCTTTGACATCATGAATGATACTTCCATTGATGTTGC 704
| |||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 TCTGGCCAATAATGTATTCTTTCCCTTTGACATCATGAATGATACTTCCATTGATGTTGC 1795
Query 705 AAAGGAGACGGTAATAGAACTCGAGATCACAGATTGGGAACTAGTTGAGATTGCTAGAAT 764
|||||||| ||||| ||||||||| || | ||||||||| | ||| |||||||||| |||
Sbjct 1796 AAAGGAGATGGTAAAAGAACTCGAAATTATAGATTGGGAGCCAGTCGAGATTGCTAAAAT 1855
Query 765 GATTGATGGAGAGATCTCTTCTTTGCTGTCTGGTTGG 801
||||||||||| ||| ||||||||| |||||| ||||
Sbjct 1856 GATTGATGGAGCGATTTCTTCTTTGGTGTCTGATTGG 1892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39885912718
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5