BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917424
Length=1863
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57190.1 | Symbols: PSD2 | phosphatidylserine decarboxylase ... 2499 0.0
AT4G25970.1 | Symbols: PSD3 | phosphatidylserine decarboxylase ... 1589 0.0
> AT5G57190.1 | Symbols: PSD2 | phosphatidylserine decarboxylase
2 | chr5:23171531-23175364 REVERSE LENGTH=1908
Length=1908
Score = 2499 bits (1353), Expect = 0.0
Identities = 1496/1565 (96%), Gaps = 9/1565 (1%)
Strand=Plus/Plus
Query 294 GACAAATAGGCTCTCAAGGAACAAAATCATCGGTTATTGTGAGCTTGATATATTCGATTT 353
||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 GACCAATAGGGTAGCGAGGAACAAAATCATCGGTTATTGTGAGCTTGATATATTCGATTT 407
Query 354 TGCAGTGCAGGAACCTGAGTCGGCGTGTAAGTCATTTGACTTGTTAGATCCCACATCATC 413
|| ||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||
Sbjct 408 TGTAGTGCAGGAACCTGAGTCGACTTGTAAGTCATTTAACTTGTTAGATCCCACATCATC 467
Query 414 CAATGTTGTTGGCACCATTTTCCTTTCTTGCGCTATTGAGGATCCTGTTGAAACCGAGAG 473
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 468 CAATGTTGTTGGCTCCATTTTCCTTTCTTGCGCTATTGAGGATCCTGTTGAAACTGAGAG 527
Query 474 GCGGTTTGCAAAGCGTATCTTGTCCATAGTGGTGCAGGACTACAATGAAGATGGACAACT 533
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 528 GCGGTTTGCAAAGCGTATCTTGTCCATA---GT---GGACTACAATGAAGATGGACAACT 581
Query 534 GTCGTTTTCGGAGTTCTCTGATCTAATAAAGGCTTTTGGAAATTTAGTGGCTGCTAACAA 593
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 582 CTCGTTTTCGGAGTTCTCTGATCTAATAAAGGCTTTTGGAAACTTAGTGGCTGCGAACAA 641
Query 594 GAAAGAAGAGTTGTTCAAAGCTGCTGACCTGAATGGGGACGGTGTTGTGACGATTGACGA 653
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 GAAAGAGGAGTTGTTTAAAGCTGCTGACCTGAATGGGGACGGTGTTGTGACGATTGACGA 701
Query 654 GTTGGCTGTGCTTCTTGCTCTTCAACAAGAACAGGAGCCAATAATAAATAATTGTCCGGT 713
||| |||| |||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 702 GTTAGCTGCGCTTCTTGCTCTTCAACAAGAACAAGAGCCAATTATAAACAATTGTCCGGT 761
Query 714 GTGTGGTGAGGCTCTTCAGCTCTCTGACAAGCTCAACGCGATGATTCATATGACTCTTTG 773
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GTGTGGTGAGGCTCTTCAGGTCTCTGACAAGCTCAACGCGATGATTCATATGACTCTTTG 821
Query 774 TTTTGACGAAGGAACGGGTAATCAAGTGATGACCGGAGGGTTTTTGACTGATAGACAAGC 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 TTTTGACGAAGGAACGGGTAATCAAGTGATGACCGGAGGGTTTTTGACTGATAGACAAGC 881
Query 834 TTCTTATGGATGGATGTTCAAACTAAGTGAATGGACACACTTATCAACTTATGACGTTGG 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 TTCTTATGGATGGATGTTCAAACTAAGTGAATGGACACACTTATCAACTTATGACGTTGG 941
Query 894 TTTGAATACTGGTTCAAGTGCCTCATATATTGTGGTAATTGACCGGAAGAGTAAGAGACT 953
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 942 TTTGAATACTGGTTCAAGTGCTTCATATATTGTGGTAATTGACCGGAAGAGTAAAAGACT 1001
Query 954 CGTGGAAGAGTTGATAGACTCAAAGATTGTTCTCTCCATGAGAGCTATTTATCAGTCAAA 1013
|||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1002 TGTGGAAGAGTTGATTGATTCAAAGATTGTTCTGTCCATGAGAGCTATTTACCAGTCAAA 1061
Query 1014 AATTGGACTTCGACTTATGGATCAAGGGGCAAAGGAGATTCTGCAGAGACTTTCTGAGAA 1073
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 AATTGGACTAAGACTTATGGATCAAGGGGCAAAGGAGATTCTGCAGAGACTTTCTGAGAA 1121
Query 1074 GCAGGGGAAGAAAATGAGCTCTGTTGAATCCGCACAAAAAATACCACGCTTTCTCGAGTT 1133
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1122 GCAGGGGAAGAAAATGAGCTCAGTTGAATCCGCACAAAAAATACCACGCTTTCTCGAGTT 1181
Query 1134 CTTTAAGGATCAAATAAACATGGCTGAAGTCAAGTATCCTCTGCAGCATTTTAAGACGTT 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 CTTTAAGGATCAAATAAACATGGCTGAAGTCAAGTATCCTCTGCAGCATTTTAAGACGTT 1241
Query 1194 CAATGAGTTCTTCATCCGGGAGTTGAAACCTGGTGCAAGACCAATTGCTTGCATGAAAGG 1253
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1242 CAATGAGTTCTTTATCCGAGAGTTGAAACCTGGTGCAAGACCAATTGCTTGCATGAACCG 1301
Query 1254 CGATGATGTTGCCGTATGTGCTGCTGATTGTCGATTAATGGCATTTCAGTCGGTGGAGGA 1313
| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1302 CAATGATGTTGCTGTATGTGCCGCTGATTGTCGATTAATGGCATTTCAGTCGGTGGAAGA 1361
Query 1314 TAGTACCCGTTTCTGGATCAAGGGCAAAAAGTTTTCAATAAGAGGCCTTCTTGGGAAGAG 1373
||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1362 TAGTACCAGATTCTGGATCAAGGGCAAAAAGTTTTCAATAAGAGGCCTCCTTGGGAAGA- 1420
Query 1374 TACTGTGAATACAAATGCCTTCCTTGATGGATCTTTGGTGATATTCCGACTAGCACCACA 1433
| ||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1421 -A-TGTGAATCCAAATGCCTTCCTTGATGGATCTTTGGTTATATTCAGACTAGCACCACA 1478
Query 1434 GGATTATCATCGGTTTCATGTCCCTGTCTCTGGAGTCATTGAAAAGTTTGTGGATCTTTC 1493
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1479 GGATTATCATCGGTTTCATGTCCCTGTCTCTGGAGTCATTGAACAGTTTGTGGATGTTTC 1538
Query 1494 TGGAAGCTTATATACAGTTAATCCGATTGCGGTCAATAGCAAGTACTGTAATGTATTCAC 1553
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1539 TGGAAGCTTATATACAGTTAATCCAATTGCGGTCAATAGCAAGTACTGTAATGTATTCAC 1598
Query 1554 GGAAAATAAACGAACCGTTGCAATTATATCAACAGCAGAATTTGGAAAGGTTGCTTTTGT 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 GGAAAATAAACGAACCGTTGCAATTATATCAACAGCAGAATTTGGAAAGGTTGCTTTTGT 1658
Query 1614 TGCAATCGGTGCGACAATGGTTGGTAGCATAAATTTTGAGAGAAAGGAAGGAGAACATGT 1673
|||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1659 TGCAATCGGTGCAACAATGGTTGGTAGCATAAATTTTGTTAGAAAGGAAGGAGAGCATGT 1718
Query 1674 GAAGAAAGGGGATGAACTTGGTTATTTTTCATTTGGTGGAAGCACAGTTATATGTGTCTT 1733
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1719 GAAGAAAGGAGATGAACTTGGTTATTTTTCGTTTGGTGGAAGCACAGTTATATGTGTCTT 1778
Query 1734 TGAAAAGGACTCGATCCGGATCGATGAGGATCTCTTGGTTAACAGTGGTAGGTCCTTAGA 1793
|||||||||| ||||| |||||||| | |||||||||||||||||||||||||| |||||
Sbjct 1779 TGAAAAGGACGCGATCGGGATCGATAATGATCTCTTGGTTAACAGTGGTAGGTCTTTAGA 1838
Query 1794 GACATTAGTGAGTGTTGGAATGCAATTAGGTGTCTCCACAAGGACATTTGCTAGGTCTAC 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 GACATTAGTGAGTGTTGGAATGCAATTAGGTGTCTCCACAAGGACATTTGCTAGGTCTAC 1898
Query 1854 ATTGA 1858
|||||
Sbjct 1899 ATTGA 1903
Score = 431 bits (233), Expect = 1e-119
Identities = 274/293 (94%), Gaps = 6/293 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAACGGAAACTCAAGGGAGGAGGCTAAAGAATCGAGACGGTCAAAGCTACGACAG 60
||||||||||||||||||| | ||||||||| |||||||||||||||| |||||||||
Sbjct 1 ATGGGAAACGGAAACTCAA--G-GGAGGCTAAGGAATCGAGACGGTCAAGGCTACGACAT 57
Query 61 AAGCTACAAAAGTTTCGCATTCACCGTCGTCATCTTCGTTGTTCTCGAAACTCGTCGGCA 120
||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||
Sbjct 58 AAGCTACAAAAGTTTCGCATTCACCGTCGTCATCTTCGTAGTTCTCGAAA--C-TCGGCA 114
Query 121 GGAATGGTCATACAAAGAGCTGTGTCCGCCGAGGATTTCTCCGGCATTGCGCTTCTCACT 180
|||||||| |||||| || |||| ||||||||||||||||||||||||||||||||||||
Sbjct 115 GGAATGGTGATACAACGAACTGTTTCCGCCGAGGATTTCTCCGGCATTGCGCTTCTCACT 174
Query 181 CTCATTGGCGCGGATATGAAGTTTAAAGACAAGTGGCTCGCTTGTGTTTCTTTCGGTGAA 240
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 175 CTCATTGGCGCGGAAATGAAGTTTAAGGACAAGTGGCTCGCTTGTGTTTCTTTCGGTGAA 234
Query 241 CAGACTTTTAGAACTGAAATCTCTGATACTACAGAGAAGCCAATTTGGAACTC 293
|||||||| |||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 235 CAGACTTTCAGAACTGAAATCTCAGATACTACACAGAAGCCAATTTGGAACTC 287
> AT4G25970.1 | Symbols: PSD3 | phosphatidylserine decarboxylase
3 | chr4:13184114-13189435 FORWARD LENGTH=2330
Length=2330
Score = 1589 bits (860), Expect = 0.0
Identities = 1333/1556 (86%), Gaps = 53/1556 (3%)
Strand=Plus/Plus
Query 294 GACAAATAGGCTC-TCAAGGAACAAAATCATCGGTTATTGTGAGCTTGATATA-TTCGAT 351
||| ||||| ||| | || |||||| ||| | |||||||||||||||||| || || |||
Sbjct 477 GACCAATAGACTCTTGAA-GAACAATATCGTTGGTTATTGTGAGCTTGATCTACTT-GAT 534
Query 352 TTTGCAGTGCAGGAACCTGAGTCGGCGTGTAAGTCATTTGACTTGTTAGATCCC-ACATC 410
|| | ||| ||||||||||| || | || |||||||||||| ||||||| ||| | ||
Sbjct 535 TTCGTAGTACAGGAACCTGACTCTACTTGCAAGTCATTTGACCTGTTAGA-CCCGGCCTC 593
Query 411 ATCCAATGTTGTTGGCACCAT-TTTCCTTTCTTGCGCTATTGAGGATCCTGTTGAAACCG 469
||| || |||||||||| ||| ||| |||| ||| | |||||||||||||||||||||
Sbjct 594 ATCTAACGTTGTTGGCAGCATGTTT-GTTTCATGCTCCGTTGAGGATCCTGTTGAAACCG 652
Query 470 AGAGGC-GGTTT-GCAAAGCGTATCTTGTCCATAGTGGTGCAGGACTACAATGAAGATGG 527
||| | |||| || |||||||| ||||||||| || ||| || | ||||||||
Sbjct 653 AGA--CATGTTTCGCGAAGCGTATTTTGTCCATA---GT---GGATTATGACGAAGATGG 704
Query 528 ACAACTGTCGTTTTCGGAGTTCTCTGATCTAATAAAGGCTTTTGGAAATTTAGTGGCTGC 587
| |||| || || || |||||||||||||| || || |||||||| ||| ||||||||||
Sbjct 705 AAAACTCTCATTCTCAGAGTTCTCTGATCTGATGAATGCTTTTGGGAATGTAGTGGCTGC 764
Query 588 TAACAAGAAAGAAGAGTTGTTCAAAGCTGCTGACCTGAATGGGGACGGTGTTGTGACGAT 647
|||||||||||| |||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct 765 TAACAAGAAAGAGGAGTTGTTCAAAGCCGCTGACCTGAATGGGGATGGTGTTGTTACAAT 824
Query 648 TGACGAGTTGGCTGTGCTTCTTGCTC-TTCAACAAGAACAGGAGCCAATAATAAATAATT 706
||| |||||||||| |||||||| | ||||||| |||||||||||||| ||||||| ||
Sbjct 825 TGATGAGTTGGCTGCACTTCTTGC-CGTTCAACAGGAACAGGAGCCAATTATAAATAGTT 883
Query 707 GTCCGGTGTGTGGTGAGGCTCTTCAGCTCTCTGACAAGCTCAACGCGATGATTCATATGA 766
||||||| || |||||||||||||| || |||||||||||| || ||||| |||||||
Sbjct 884 GTCCGGTTTGCGGTGAGGCTCTTCA--ACT-TGACAAGCTCAATGCAATGATCCATATGA 940
Query 767 CTCTTTGTTTTGACGAAGGAACGGGTAATCAAGTGATGACCGGAGGGTTTTTGACTGATA 826
|||| ||||||||||||||||| ||||||||| |||||||||||||| ||||||||||
Sbjct 941 CTCTCTGTTTTGACGAAGGAACTGGTAATCAA---ATGACCGGAGGGTTCTTGACTGATA 997
Query 827 GACAAGCTTCTTATGGATGGATGTTCAAACTAAGTGAATGGACACA-CTTATCAACTTAT 885
| || ||||| |||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 998 GGCAGGCTTCATATGGATGGATGTTCAAACTAAGTGAATGGACTCATCT-ATCAACTTAT 1056
Query 886 GACGTTGGTTTGAATACTGGTTCAAGTGCCTCATATATTGTGGTAATTGACCGGAAGAGT 945
|| |||||||||||||||||||||||||| ||| |||||||||| ||||| |||||| |
Sbjct 1057 GATGTTGGTTTGAATACTGGTTCAAGTGCTTCACATATTGTGGTGATTGATAGGAAGACT 1116
Query 946 AAGAGACTCGTGGAAGAGTTGATAGACTCAAAGATTGTTCTCTCCATGAGAGCTATTTAT 1005
||||| ||||||||||||||||| || |||||||||||| | || ||||||||||||||
Sbjct 1117 AAGAGGCTCGTGGAAGAGTTGATTGATTCAAAGATTGTTATGTCTATGAGAGCTATTTAC 1176
Query 1006 CAGTCAAAAATTGGACTTCGACTTATGGATCAAGGGGCAAAGGAGATTCTGCAGAGAC-T 1064
||||||||||| ||||| || |||||||| ||||| ||||| |||||| |||||| || |
Sbjct 1177 CAGTCAAAAATAGGACTCCGGCTTATGGACCAAGGAGCAAAAGAGATTTTGCAGA-ACCT 1235
Query 1065 TTCTGAGAAGCAGGGGAAGAAAATGAGCTCTGTTGAATCCGCACAAAAAATACC-ACGCT 1123
||||||||| |||||||| ||||||| ||| |||||||| || ||||| || || | |||
Sbjct 1236 TTCTGAGAAACAGGGGAAAAAAATGAACTCAGTTGAATCTGCCCAAAATATTCCCA-GCT 1294
Query 1124 TTCTCGAGTTCTTT-AAGGATCAAATAAACATGGCTGAAGTCAAGTATCCTCTGCAGCAT 1182
|||||||||| ||| |||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 1295 TTCTCGAGTT-TTTCAAGGATCAAATAAACATGGCCGAAGTCAAGTATCCTCTGGACCAT 1353
Query 1183 TTTAAGACGTTCAATGAGTTCTTCATCCGGGAGTTGAAA-CCTGGTGCAAGACCAATTGC 1241
||||||||||||||||| |||||| | |||||||| ||| ||||||||||||||||||||
Sbjct 1354 TTTAAGACGTTCAATGAATTCTTCGTACGGGAGTT-AAAGCCTGGTGCAAGACCAATTGC 1412
Query 1242 TTGCATGAA--AGGCGATGATGTTGCCGTATGTGCTGCTGATTGTCGATTAATGGCATTT 1299
|||||| | ||| |||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1413 GTGCATGGATCAGG--ATGATGTTGCTGTATCTGCTGCTGATTGTCGATTAATGGCATTT 1470
Query 1300 CAGTCGGTGGAGGATAGTACCCGTTTCTGGATCAAGGGCAAAAAGTTTTCAAT-AAGAGG 1358
|| ||||| || ||||| || || ||||||||||||||| ||||||||||| || |||
Sbjct 1471 CAATCGGTTGATGATAGCACACGGTTCTGGATCAAGGGCCGTAAGTTTTCAATCAA-AGG 1529
Query 1359 CCTTCTTGGGAAGAGTACTGTGAA-TACAAATGCCTTCCTTGATGGATCTTTGGTGATAT 1417
||| ||||| || | | |||| | | | |||| |||||||||||||||||||||||||
Sbjct 1530 CCTCCTTGGAAAT-G-A-TGTGCAGT-CGGATGCTTTCCTTGATGGATCTTTGGTGATAT 1585
Query 1418 TCCGACTAGCACCACAGGATTATCATCGGTTTCATGTC-CCTGTCTCTGGAGTCATTGAA 1476
||||| | || |||||||| |||||||| |||||| || ||||||||||| |||||||||
Sbjct 1586 TCCGATTGGCGCCACAGGACTATCATCGTTTTCAT-TCTCCTGTCTCTGGTGTCATTGAA 1644
Query 1477 AAGTTTGTGGATCTTTCTGGAAGCTTATATACAGTTAATCCGATTGCGGTCAATAGCAAG 1536
|||||||| || ||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1645 AAGTTTGTCAATGTTTCTGGAAGCTTATATACGGTTAATCCGATTGCTGTCAATAGCAAG 1704
Query 1537 TACTGTAATGTATTCACGGAAAATAAACGAACCGTTGCAATTATATCAACAGCAGAATTT 1596
||||||||||| ||||| || |||||||| ||| | | |||||||||||||||||| |||
Sbjct 1705 TACTGTAATGTGTTCACTGAGAATAAACGGACCATCGTAATTATATCAACAGCAGAGTTT 1764
Query 1597 GGAAAGGTTGCTTTTGTTGCAATCGGTGCGACAATGGTTGGTAGCATAAATTTTGAGAGA 1656
|||||||| || |||||||| || || || |||||||||||||| || | |||| ||
Sbjct 1765 GGAAAGGTCGCATTTGTTGCGATTGGAGCAACAATGGTTGGTAGTATCAGCTTTGTTAGG 1824
Query 1657 -AAGGAAGGAGAACATGTGAAGAAAGGGGATGAACTTGGTTATTTTTCATTTGGTGGAAG 1715
||| | ||||| ||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 1825 CAAG-AGGGAGACCATGTGAAGAAAGGGGACGAGCTTGGTTACTTTTCATTTGGTGGAAG 1883
Query 1716 CACAGTTATATGTGTCTTTGAAAAGGACTCGATCCGGATCGATGAGGATCTCTTGGTTAA 1775
|||||||||||| |||||||||||||||||||| ||| |||||||||||||| | |||
Sbjct 1884 CACAGTTATATGCGTCTTTGAAAAGGACTCGATTAAGATTGATGAGGATCTCTTAGCTAA 1943
Query 1776 CAGTGGTAGGTCCTTAGAGACATTAGTGAGTGTTGGAATGCAA-TTAGGTGTCTCC 1830
||||| ||||||||| ||||||||||| | ||||||||||||| || |||||||||
Sbjct 1944 CAGTGCTAGGTCCTTGGAGACATTAGTTACTGTTGGAATGCAACTT-GGTGTCTCC 1998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92218401165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5