BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917433
Length=210
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10770.1 | Symbols: | Single-stranded nucleic acid binding ... 313 5e-85
AT5G05100.1 | Symbols: | Single-stranded nucleic acid binding ... 204 3e-52
> AT3G10770.1 | Symbols: | Single-stranded nucleic acid binding
R3H protein | chr3:3372264-3374271 REVERSE LENGTH=1444
Length=1444
Score = 313 bits (169), Expect = 5e-85
Identities = 193/205 (94%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGCTATGACCGAGAAGGAAGCTATGGTAGATCCTTTTTTGGTCGAGGCTCTTCAG 60
|||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 246 ATGGCTTCTATGACCGAGAAGGAAGCTATGGTGGATCCTTTTCTGGTCGAGGCTCTTCAA 305
Query 61 AATCCTCGCCATCGTCTCACCATTTTGTGGATGGAGATTGATATACAGAAGTTCTTTCAA 120
|||||||| |||||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct 306 AATCCTCGTCATCGTCTCACCATTTTGCGAATGGAGCTTGATATACAGAAGTTCTTTCAA 365
Query 121 AACCCTGAGCAGCTTCAGTTAGAATTCCTGCCTTTTCCAACATCGTACATGCGTTTTGCT 180
|||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||||
Sbjct 366 AACCCTGAGCAGCTTCAGTTCGAATTCCCGCCTTTTCCAACATCGTACCTGCGTCTTGCT 425
Query 181 GCACATCGAGTTGCTCAGCATTATG 205
|||||||||||||||||||||||||
Sbjct 426 GCACATCGAGTTGCTCAGCATTATG 450
> AT5G05100.1 | Symbols: | Single-stranded nucleic acid binding
R3H protein | chr5:1505122-1507224 REVERSE LENGTH=1598
Length=1598
Score = 204 bits (110), Expect = 3e-52
Identities = 174/205 (85%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGCTATGACCGAGAAGGAAGCTATGGTAGATCCTTTTTTGGTCGAGGCTCTTCAG 60
||||| ||||||| ||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 285 ATGGCCGCTATGAGCGACAAGGAAGCTATGGTGGATCCTTTTTTGGTCGAGGCTCTTCAG 344
Query 61 AATCCTCGCCATCGTCTCACCATTTTGTGGATGGAGATTGATATACAGAAGTTCTTTCAA 120
|| ||||| |||||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct 345 AACCCTCGTCATCGTCTCACCATTTTGCGTATGGAGCTTGATATACAGAAGTTCTTTCAA 404
Query 121 AACCCTGAGCAGCTTCAGT-TAGAATTCCTGCCTTTTCCAACATCGTA-CATGCGTTTTG 178
| || ||||||| || | | || |||| |||||| || ||||| || | | ||| ||
Sbjct 405 AGTCCAGAGCAGCAACAATAT-GAGTTCCAGCCTTTGCCTACATCTTATCTT-CGTCTTA 462
Query 179 CTGCACATCGAGTTGCTCAGCATTA 203
||| || || ||||||||||||||
Sbjct 463 TTGCTCACCGTGTTGCTCAGCATTA 487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9406352637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5