BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917448
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57400.1 | Symbols: | unknown protein; Has 1 Blast hits to ... 852 0.0
> AT5G57400.1 | Symbols: | unknown protein; Has 1 Blast hits to
1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:23261985-23263457 REVERSE LENGTH=1030
Length=1030
Score = 852 bits (461), Expect = 0.0
Identities = 550/593 (93%), Gaps = 5/593 (1%)
Strand=Plus/Plus
Query 1 ATGAATCAAGAACACAATACCACAACTCCAATACCAAAAGCTTCATTATTGTTACTAGAG 60
|||||||||||| || ||| || ||||||||||||||||||||||||||||||| | |||
Sbjct 180 ATGAATCAAGAATACGATAACATAACTCCAATACCAAAAGCTTCATTATTGTTAATGGAG 239
Query 61 GATGATCTATGCAAGAGAGAATCAGAGATCTCAAGAAACTCATCGGTGGGAGTTTCTTCT 120
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 AATGATCTATGCAAGAGAGAATCAGAGATCTCAAGAAGCTCATCGGTGGGAGTTTCTTCT 299
Query 121 AGATTGTTCTATTACTACCATCATCGAAGTTTCAACGAAGGAGTTCCTTTTAAGTGGGAG 180
||||||||||||||||| |||||||| ||| |||| ||||||||||||||||||||||||
Sbjct 300 AGATTGTTCTATTACTATCATCATCGTAGTCTCAATGAAGGAGTTCCTTTTAAGTGGGAG 359
Query 181 ATGCAGCCGGGAACACCGATCAATCCTCCGCCGGAAGAAATCATTCGTCCGATTACACCT 240
||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| |||
Sbjct 360 ATGCAGCCGGGAACACCGATCAACCCTCCGCCGGAAGAAAACGTTCGTCCGATTACTCCT 419
Query 241 CCTCCGGCGTTTCTCAGCCTTGGTTTCCCTAAACCCTCAATCTCAGTCGTCGGAGGTTCT 300
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 420 CCTCCGGCGTTTCTCAGCCTTGGTTTCCCTGAACCCTCAGTCTCAGTCGTCGGAAATTCT 479
Query 301 AATAAACATTCTCT-TTTCCCGGCGAATCTTAAGCTTTGGAGATGGAAGAATCTGCGTAA 359
|||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| || ||
Sbjct 480 AATAAACATTCTCTATTTCC-GGCGAATATTAAGCTTTGGAGATGGAAGAATCTTCGAAA 538
Query 360 GAGATATCTCTCTAGATGGTCAAGCCAAAGCATGCTTAATAAAGATTATCATATTTCTCG 419
||||||| ||||||||||||| |||||||||||||||||||||||| || ||| | ||||
Sbjct 539 GAGATATTTCTCTAGATGGTCGAGCCAAAGCATGCTTAATAAAGATAATAATAATGCTCG 598
Query 420 TGACGGTAATTCAAATTCTTGTGATGAATTGGAGAGATTCGAGGAGTTTAAGGATTACAG 479
||||||||||||||||||||||||||| |||||||||||||||| |||||| || |||||
Sbjct 599 TGACGGTAATTCAAATTCTTGTGATGACTTGGAGAGATTCGAGGGGTTTAATGACTACAG 658
Query 480 GTCGAGCTCATGTTCTTCTTCGTCGTCGTCTTCCTCGAAAGATCGGAGATTGATAAAGGC 539
||||||||||| ||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 659 GTCGAGCTCATCTTCTTCTTCGTCGTC-T-T-CCTCGAAAGATCGGAGATTGATAAAGGC 715
Query 540 TTCACCACGTCAATGGTTTAGCGGTTGTCCATCTCGGAATTCAAGAAACAATC 592
|||||||| ||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 716 GTCACCACGGCAATGGTTTAGGGGTTCTCCATCTCGGAATTCAAGAAACAATC 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5