BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917464

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G36290.1 | Symbols:  | Uncharacterized protein family (UPF00...   272    2e-72


> AT5G36290.1 | Symbols:  | Uncharacterized protein family (UPF0016) 
| chr5:14302739-14305176 FORWARD LENGTH=1224
Length=1224

 Score =  272 bits (147),  Expect = 2e-72
 Identities = 188/208 (90%), Gaps = 2/208 (1%)
 Strand=Plus/Plus

Query  174   CCATCGGGGCAACTATTGGACAAACGCGTTGTGTACTTCACCAGCGGTTGTTGGAGGAAG  233
             |||| ||||||| ||||||||| ||  | |||||||||||| ||| ||||||||||||||
Sbjct  863   CCATTGGGGCAAGTATTGGACACAC-TG-TGTGTACTTCACTAGCAGTTGTTGGAGGAAG  920

Query  234   CATGCTGGCTTTAAGGATCTCACAACGGACGGTTGCAACTGTTGGAGGCTTGCTCTTCTT  293
             ||||||||||| ||||||||| ||||| ||||| ||||||||||||||||| |||||| |
Sbjct  921   CATGCTGGCTTCAAGGATCTCGCAACGTACGGTCGCAACTGTTGGAGGCTTACTCTTCCT  980

Query  294   CGGCTTTTCAGTCTCCTCCTATTTCTATCCTCCATTACAGTCAATGCGCTTCTTTCGAAA  353
             ||||||||||||||||||||||||||||||||||||  ||| |||| |||||||||||||
Sbjct  981   CGGCTTTTCAGTCTCCTCCTATTTCTATCCTCCATTGTAGTAAATGTGCTTCTTTCGAAA  1040

Query  354   ATGGGTGTTGGAGACATTTTCTAAGTAA  381
             ||||||||| |||||| |||||||||||
Sbjct  1041  ATGGGTGTTAGAGACAATTTCTAAGTAA  1068


 Score =  111 bits (60),  Expect = 4e-24
 Identities = 76/84 (90%), Gaps = 0/84 (0%)
 Strand=Plus/Plus

Query  80   GTTTAAGAGAAGCTCAAGTTATGCCAAGGGAAGACAGCCTTCCGTCGCTTATTCTCAAGA  139
            ||| ||||||||||| ||| | | |||||||||||| |||||||||| ||||||||||||
Sbjct  688  GTTGAAGAGAAGCTCGAGTCAGGTCAAGGGAAGACACCCTTCCGTCGTTTATTCTCAAGA  747

Query  140  TTTTGTACCCCAATATTTCTAGAG  163
            |||||||||||||||||||| |||
Sbjct  748  TTTTGTACCCCAATATTTCTGGAG  771



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17945586393


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5