BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917467
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55440.1 | Symbols: | Protein of unknown function (DUF295) ... 926 0.0
AT5G67040.1 | Symbols: | Protein of unknown function (DUF295) ... 377 1e-103
> AT5G55440.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:22465693-22467209 FORWARD LENGTH=1343
Length=1343
Score = 926 bits (501), Expect = 0.0
Identities = 882/1063 (83%), Gaps = 37/1063 (3%)
Strand=Plus/Plus
Query 1 ATGGCTCTGTTTC-TCAACCGCGTCTTGACGCTCTCTGGACGCAGGGACAATGCTCGTTT 59
||||||||| ||| ||| ||| ||| | ||| |||||||||||| |||||||||||||
Sbjct 26 ATGGCTCTG-TTCTTCAGCCGAATCTCAAAGCTTTCTGGACGCAGGAACAATGCTCGTTT 84
Query 60 TTTCTCATCATTGCCGCAGTTCCCGTATTTGCTAATGGGCGGTAAGAAGTTTG-GAGAGT 118
|||||||||||||| | || ||| | ||| | || | ||||||| ||| ||| ||
Sbjct 85 CTTCTCATCATTGCCTCCGTCCCCATGCTTGGTGCTGACCACTAAGAAG-TTGCGAGGGT 143
Query 119 CTCC---GGAGGGTAAAATCAG-GAAGCACAGGTTATTTGATCCGACAACTGAAGAGACA 174
|||| |||||| |||| | | | |||| |||||| || ||| | || ||| | | |
Sbjct 144 CTCCAGAGGAGGGCCTAATC-GTGCATCACAAGTTATTCGAACCGGCTACGGAAAAAAAA 202
Query 175 GTGTATAGCAAAGAGAAGACGAT-TCCC-AAGAAGC-TCAATGG-GCAACCTC-TCGTGG 229
||||| |||| ||||||| | | |||| ||| ||| || |||| || || | || |||
Sbjct 203 GTGTACGGCAATGAGAAGAAG-TATCCCAAAG-AGCTTC-ATGGAGC-TCCGCTTC-TGG 257
Query 230 GAGCATC-ACAAGGTTGGATAGCTTCTCTGGAGAACAAAGACCTTACCGTGCATATCACG 288
||||||| | |||||||| | |||| | | || | |||||| ||| |||||| |||||
Sbjct 258 GAGCATCGA-AAGGTTGGGTCGCTTTTTTCAAGGAGAAAGACATTAGTGTGCATCTCACG 316
Query 289 GATGTGTACAAGCCATG-GCTCTCATCTTCAAAAGTAATATCATTGCC-T---TCAA--T 341
||| |||||||||| || | |||||||| ||| ||| |||||||| || | |||| |
Sbjct 317 GATCTGTACAAGCCTTGTG-TCTCATCTCCAAGAGTCATATCATTACCATCACTCAAGCT 375
Query 342 TGGGTTTAAACCCTCAACACATGCAAC-GAGAGTGTCTTTCTCTTCTTCTGATCCTGTCC 400
| | ||||||| |||| ||||| || || ||||| | ||||||| |||||||||||||
Sbjct 376 CGACTATAAACCCGCAACTCATGCCACGGA-AGTGTGTCTCTCTTCGTCTGATCCTGTCC 434
Query 401 AAGACGACTTTTCCGTGGCTGCAAAGTTCGACGAGTATCGGC-TAAGTGTATGTAGGCCT 459
||||||||| || |||||||||||||||| | || |||| | |||||||||||||||||
Sbjct 435 AAGACGACTATTACGTGGCTGCAAAGTTCAATGACTATC-ACGTAAGTGTATGTAGGCCT 493
Query 460 TGTTGGGACTCTAAGTGGACTCACATCGAGACAGCTTATTCTCTTTTACCAGCCTCTGAT 519
||||||||||| | |||||||||| |||||| | ||| ||||||||||||||||||
Sbjct 494 CGTTGGGACTCTGACTGGACTCACAACGAGACCGGTTACAGTCTTTTACCAGCCTCTGAG 553
Query 520 CTCATGTATTCCAAGAGAGACAAAGTCTTCTACTTTACCAGTTTTAAGGGTAACTACATG 579
|||||||| |||||||||||||||| |||| ||||||| |||||||||||| |||||||
Sbjct 554 CTCATGTACTCCAAGAGAGACAAAGCCTTCCACTTTACGAGTTTTAAGGGTCTCTACATG 613
Query 580 GCTTCCT-TGGATCTCAGCAACAACTTCGAGCCCGAGTATCAACACTTACGCCTTCGAAA 638
| || || || ||||||| || || |||| | ||||| || | |||||||| ||||
Sbjct 614 GGTT-CTCTGTATCTCAGTAAAAAAGACGAGATCAAGTATAAAGAGATACGCCTTAGAAA 672
Query 639 CCTGCCTAAGATCCCAGAGGTAGGTTGGGAGATGTTGGATAAATGTTTCATGACCCACCA 698
|||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| | ||
Sbjct 673 CCTGCCTAAGATTCCAGAGGCAGGTTGGGAGATGTTGGATAAATGTTCCATGACCAATCA 732
Query 699 CTTAGTGGAGTCTCCCTCTGGTGAAATTTTCTTCATCAAGTGGTATACACAGTGCATTCA 758
||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| |||||
Sbjct 733 CTTAGTGGATTCTCCCTCTGGTGAACTTTTCTTCATCAAGTGGTACACACAGTGTATTCA 792
Query 759 CAAAGAGGACAAAGATGGGGATTTGGAATATATCCACAGCAGTACCAAGCGGTTCATGAT 818
|||||||||| |||||||||||||||||| | ||||||||| || |||||||||||| |
Sbjct 793 CAAAGAGGACGAAGATGGGGATTTGGAATGTCTCCACAGCAAAACTAAGCGGTTCATGGT 852
Query 819 CTTTAGGCAAGATGGGATGAGCAAAGACTTTTGTTACACGGAAGATATTGGAGATCTCTG 878
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 853 CTTTAGGCAAGATGGGATGAGCAAAGACTTTGGTTACACTGAAGATATTGGAGATCTCTG 912
Query 879 CATCTTCCTTAGTGAGAGTGAAGCCTTCTGTCTCTCGGCAAGCTTGTACCCTAGG-CTCA 937
|||||||||| | ||||||||||||||||| || ||||||| |||||||| ||| ||||
Sbjct 913 CATCTTCCTTGGCAAGAGTGAAGCCTTCTGTGTCACGGCAAGTTTGTACCC-AGGGCTCA 971
Query 938 AACCTAACTCCATCTATTACATTGGTCCTAGACTTGGTTCTTACGATCTGGCTTCTGGTA 997
|||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||||||
Sbjct 972 AACCTAACTCCATCTATTACCTTGGCCCTAGATTTGGTTCTTACGATCTAGCTTCTGGTA 1031
Query 998 CGGACCGTCCCTTCACCTTCGATCGCCTTGGTGATCCCTCGCT 1040
| || || ||||||| ||||||||| ||||| | ||||||||
Sbjct 1032 CAAACAGTTCCTTCACGTTCGATCGCTTTGGTAAACCCTCGCT 1074
> AT5G67040.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:26757896-26758475 REVERSE LENGTH=498
Length=498
Score = 377 bits (204), Expect = 1e-103
Identities = 350/421 (83%), Gaps = 8/421 (2%)
Strand=Plus/Plus
Query 594 CAGCAACAACTTCGAGCCCGAGTATC-AACACTTACGCCT-TCGAAACCTGCCTAAGATC 651
|||||||||| | ||| | |||||| || || | ||||| || ||||| || |||||
Sbjct 21 CAGCAACAACAACAAGCTCAAGTATCAAAAAC-TGCGCCTCTC-CAACCTCCCCAAGATT 78
Query 652 CCAGAGGTAGGTTGGGAGATGTTGGATAAATGTTTCATGACCCACCACTTAGTGGAGTCT 711
|| || | |||| |||||||||||||| |||||||||||| | | ||||| ||||| |||
Sbjct 79 CCTGACGCAGGTCGGGAGATGTTGGATCAATGTTTCATGAGCAAGCACTTGGTGGAATCT 138
Query 712 CCCTCTGGTGAAATTTTCTTCATCAAGTGGTATACACAGTGCATTCACAAAGAGGACAAA 771
|||||||||||| ||||||| |||| ||||| |||| |||||||||| |||||| |||
Sbjct 139 CCCTCTGGTGAACTTTTCTTGGTCAACTGGTACGCACAATGCATTCACACAGAGGAAAAA 198
Query 772 GATGGGGATTTGGAATATATCCACAGCAGTACCAAGCGGTTCATGATCTTTAGGCAAGAT 831
|| || || ||||| | ||||||||| ||||||||||||||| |||||||| |||||
Sbjct 199 GACGGAGAAGTGGAAGGTCTCCACAGCAAAACCAAGCGGTTCATGGTCTTTAGGGAAGAT 258
Query 832 GGGATGAGCAAAGACTTTTGTTACACGGAAGATATTGGAGATCTCTGCATCTTCCTTAGT 891
| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 259 GAGAAGAGCAAAGACTTTAGTTACACGGAAGATATTGGAGATCTCTGCATCTTCCTTGGC 318
Query 892 G-AGAGTGAAGCCTTCTGTCTCTCGGCAAGCTTGTACCCTAGGCTCAAACCTAACTCCAT 950
| | |||||||| ||||| ||| |||||||| ||||||| |||| ||||||||||| ||
Sbjct 319 GCA-AGTGAAGCGTTCTGCCTCACGGCAAGCATGTACCCGGGGCTTAAACCTAACTCTAT 377
Query 951 CTATTACATTGGTCC-TAGACTTGGTTCTTACGATCTGGCTTCTGGTACGGACCGTCCCT 1009
|||||||||||| || | | |||||||| |||||||| | |||||||||| || | |||
Sbjct 378 CTATTACATTGG-CCATGGTCTTGGTTCATACGATCTAACCTCTGGTACGGTCCATTCCT 436
Query 1010 T 1010
|
Sbjct 437 T 437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5