BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917490

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G57780.1 | Symbols:  | EXPRESSED IN: 18 plant structures; EX...   726    0.0  


> AT5G57780.1 | Symbols:  | EXPRESSED IN: 18 plant structures; 
EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana 
protein match is: sequence-specific DNA binding transcription 
factors (TAIR:AT4G30410.1); Has 123 Blast hits to 123 proteins 
in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 
(source: NCBI BLink). | chr5:23405324-23406351 REVERSE LENGTH=801
Length=801

 Score =  726 bits (393),  Expect = 0.0
 Identities = 469/506 (93%), Gaps = 4/506 (1%)
 Strand=Plus/Plus

Query  19   ATGATGAACACGTACAACATGGTGAAGCAAAG-ATTTATCAAGAAATGGATAAATACTCT  77
            |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct  117  ATGATGAACACGTACAACATGGTGAAGC-AAGAATTTATCAAGAAATGGATAAATACTCT  175

Query  78   CCACATGTTAGATTCTTCTATTGAACATCCTTTGAACGTAACCGAGAGGAAAAATGCGAT  137
            ||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct  176  CCACATGTTAGATTCTTCTATCGAACATCCTTTGAACGTAACGGAAAGGAAAAATGCGAT  235

Query  138  TAGACTATCATCAGACTTAGCCATCGCAGCCACTAGAAGCGGCTCTACCGTATGGAGCCG  197
            |||||||||||| ||||||||||| |||||  || |||  ||||||||||||||||||||
Sbjct  236  TAGACTATCATCGGACTTAGCCATGGCAGCTGCTCGAAATGGCTCTACCGTATGGAGCCG  295

Query  198  CGCTCTCATCTCTAGGAGCGGAAACAAGACAACAAACAAACCAATGGCTCGTCGAATACT  257
            |||||| || |||||||||||||| |||||| |||||||||| ||||| |||||||||||
Sbjct  296  CGCTCTTATTTCTAGGAGCGGAAATAAGACAGCAAACAAACCCATGGCACGTCGAATACT  355

Query  258  aaaaaaaGCTCGAAATCGGATGAAGAACCGTTGTAACACTCTTAGACGAAATGGTAATTT  317
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct  356  AAAAAAAGCTCGAAATCGGATGAAGAACCGTTGTAACATTCTTAGACGAAATGGCAATTT  415

Query  318  CACGGCAAAAAG-TGGGACGAGAAAACGTACGGAGTTGCTTAAGAGTCTTGTACCGGGAG  376
            |||||| ||||  ||||  ||||||||||||||| |||||||||||||||||||||||||
Sbjct  416  CACGGCGAAAACCTGGGT-GAGAAAACGTACGGACTTGCTTAAGAGTCTTGTACCGGGAG  474

Query  377  GCGAGTTAATAGACGATAAAGATTATTTGATAAGAGAGACACTTGATTACATTGTCTATC  436
            | ||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct  475  GTGAGTTGATAGACGACAAAGATTATTTGATAAGAGAGACACTTGACTACATTGTCTATC  534

Query  437  TCCGAGCGCAAGTAGACGTCATGCGAACCGTCGCAGCCATCGATTTAGTCACCGGGAATT  496
            ||||||| ||||| |||||||||||||||||||||||| |||||||| ||||| | || |
Sbjct  535  TCCGAGCACAAGTGGACGTCATGCGAACCGTCGCAGCCGTCGATTTATTCACCCGAAACT  594

Query  497  TAACCAACGATCGTAGGAACAAATAA  522
            ||||||||||||||||||||||||||
Sbjct  595  TAACCAACGATCGTAGGAACAAATAA  620



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24966371059


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5