BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917507
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57930.2 | Symbols: APO2 | Arabidopsis thaliana protein of u... 2008 0.0
> AT5G57930.2 | Symbols: APO2 | Arabidopsis thaliana protein of
unknown function (DUF794) | chr5:23454604-23456493 FORWARD
LENGTH=1557
Length=1557
Score = 2008 bits (1087), Expect = 0.0
Identities = 1256/1333 (94%), Gaps = 29/1333 (2%)
Strand=Plus/Plus
Query 1 ATGTCGATAACTTACTCCGCTATTTCCTCTGGTACA--------G-TTTCACCTAAAAGT 51
||||||||||| |||||||||||||||||| ||||| | ||||||| ||||||
Sbjct 87 ATGTCGATAACGTACTCCGCTATTTCCTCTAGTACAGTTTCTGGGTTTTCACCAAAAAGT 146
Query 52 GTACCTTTTGCTATTCGTAGCGTAACCAGGAGGCAATTTCTTAATCCCAACCCGTTTTCT 111
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
Sbjct 147 GTACCTTTTGCTATTCATAGCGTAACCAGGAGGCAATTTCTTAATCCCAACACGTTTTAT 206
Query 112 AGATTCGGGTTCTCTCCTTCTCTTCAGGGAAGTAGCATTGAGTTTAG-----AGTTG--- 163
||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 207 AGATTTGGGTTCTCTCCTTCTCTTCAGGGAAGTAGCATTGAGTTTAGCCTTCAGTTGAAT 266
Query 164 T---GA-------TTAGTAAAGAGCGTCGATCTCTTCCATTGGTTGTGAGAAGTGATCGT 213
| || |||||||||||||||||||||| ||||| |||||||||| |||||||
Sbjct 267 TCAAGAGTTGTGCTTAGTAAAGAGCGTCGATCTCTGCCATTAGTTGTGAGAAATGATCGT 326
Query 214 CCTCAGAATGAAGACTTACCTAAGCAGTACACAAGGCGAGAGAAGAAACCTTTTCCGGTG 273
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 327 CCTCAGAATGAAGACTTACCTAAGCAGTACACAAGGCGAGAGAAGAAACCTTTCCCAGTC 386
Query 274 CCAATTGTGGACCTGAGACGAGCTGCGAGGGAGAGAGTCAAGAACAACAAAGACAAACCT 333
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 CCTATTGTGGACCTGAGACGAGCTGCGAGGGAGAGAGTCAAGAACAACAAAGACAAACCT 446
Query 334 AAGAGGCCTCTACCTCCGCCTAAAAATGGTATGGTTGTGAAGAGCCTTGTGCCTCTTGCT 393
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 AAGAGACCTCTACCTCCGCCTAAAAATGGTATGGTTGTGAAGAGCCTTGTGCCTCTTGCT 506
Query 394 TATAAAGTGTACAATGCAAGAATCAGATTGATCAACAATCTCCACCGCCTCATGAAAGTT 453
|||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 507 TATAAAGTATACAATGCAAGAATCAGATTGATCAACAATCTCCACCGGCTTATGAAAGTT 566
Query 454 GTTCGTGTTAATGCTTGTGGGTGGTGCAATGAGATTCATGTTGGACCTTACGGGCATCCA 513
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 567 GTTCGTGTTAATGCTTGTGGGTGGTGCAATGAGATTCATGTTGGACCTTATGGGCATCCA 626
Query 514 TTTAAGTCGTGTAAAGGTCCCAATGCTTCCCAAAGGAAAGGTCTTCATGAATGGACAAAC 573
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 627 TTTAAGTCGTGTAAAGGTCCCAATACTTCCCAAAGGAAAGGTCTTCATGAATGGACTAAC 686
Query 574 TCAGTTATTGAGGACGTTATTGTTCCTCTTGAAGCCTATCACCTCTATGACCGTCTTGGC 633
|| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct 687 TCGGTTATTGAGGACGTTATTGTTCCTCTTGAAGCCTATCACCTTTTTGACCGCCTTGGC 746
Query 634 AAGCGTATCCGTCACGATGAGAGATTCTCGATTCCACGAGTTCCTGCTGTAGTTGAGCTC 693
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 747 AAGCGTATCCGTCATGATGAAAGATTCTCGATTCCCCGAGTTCCTGCTGTAGTTGAGCTC 806
Query 694 TGCATTCAGGGCGGCGTTGAAAT-CCCTGAATTTCCAACAAAAAGGAGAAGAAAACCAAT 752
||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| ||
Sbjct 807 TGCATTCAGGGCGGCGTTGAAATACCC-GAATTTCCAGCAAAAAGGAGAAGAAAACCGAT 865
Query 753 TATCCGCATTGGCAAAAGCGAGTTTGTTGATGCAGATGAAACTGAATTGCCTGATCCAGA 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 TATCCGCATTGGCAAAAGCGAGTTTGTTGATGCAGATGAAACTGAATTGCCTGATCCAGA 925
Query 813 GCCTCAGCCTCCTCCAGTGCCATTGTTAACTGAGTTACCTGTCTCTGAGATCACTCCTCC 872
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 926 GCCTCAGCCTCCTCCAGTGCCATTGTTAACTGAGTTACCTGTCTCAGAGATCACTCCCCC 985
Query 873 ATCTAGCGAAGAAGAAACGGTCTCCCTAGCCGAAGAAACATTACAGGCCTGGGAAGAAAT 932
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 986 ATCTAGCGAAGAAGAAACAGTCTCCTTAGCCGAAGAAACATTACAGGCCTGGGAAGAAAT 1045
Query 933 GAGAGCAGGAGCCAAAAAGCTGATGAGGATGTACAGGGTTAGGGTTTGTGGGTACTGTCC 992
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1046 GAGAGCAGGAGCCAAAAAGCTGATGAGGATGTACAGGGTTAGGGTCTGTGGGTACTGTCC 1105
Query 993 CGAGGTTCACGTAGGTCCAACGGGGCACAAGGCCCAGAACTGTGGTGCATTCAAACACCA 1052
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1106 AGAGGTTCACGTAGGTCCAACGGGACACAAGGCCCAGAACTGTGGTGCATTCAAGCACCA 1165
Query 1053 ACAGCGGAATGGCCAGCATGGTTGGCAATCTGCAGTCCTTGACGACTTGATACCACCAAG 1112
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1166 ACAGCGGAATGGCCAGCATGGTTGGCAATCTGCAGTACTTGACGACTTGATACCGCCAAG 1225
Query 1113 ATATGTTTGGCATGTTCCTGATGTGAATGGGCCGCCGTTGCAGCGAGAGCTACGAAGCTT 1172
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1226 ATATGTTTGGCATGTTCCTGATGTGAATGGGCCACCGATGCAGCGAGAGCTACGAAGCTT 1285
Query 1173 CTACGGGCAAGCACCTGCTGTGGTGGAGATATGCGCTCAGGCTGGTGCCGTTGTACCTGA 1232
||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 1286 CTACGGGCAAGCACCTGCTGTTGTGGAGATATGTGCTCAGGCTGGCGCTGTTGTACCTGA 1345
Query 1233 GCAGTATAGAGCTACAATGAGACTGGAGGTTGGAATTCCTTCGAGTGTGAAAGAAGCTGA 1292
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 GCATTATAGAGCTACAATGAGACTGGAGGTTGGAATTCCTTCGAGTGTGAAAGAAGCTGA 1405
Query 1293 GATGGTCGTTTGA 1305
|||||| ||||||
Sbjct 1406 GATGGTTGTTTGA 1418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64206497055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5