BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917508

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G57940.1 | Symbols: ATCNGC5, CNGC5 | cyclic nucleotide gated...   213    6e-55
  AT5G56790.1 | Symbols:  | Protein kinase superfamily protein | ...   100    5e-21


> AT5G57940.1 | Symbols: ATCNGC5, CNGC5 | cyclic nucleotide gated 
channel 5 | chr5:23456667-23460613 FORWARD LENGTH=2659
Length=2659

 Score =  213 bits (115),  Expect = 6e-55
 Identities = 143/156 (92%), Gaps = 4/156 (3%)
 Strand=Plus/Plus

Query  1    ATGGCTCTCCAGCTCAGGACTGCTTATATTGCACCTTCATCACGAGTCTTTGGGCGAGGT  60
            |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  794  ATGGCTCTCCAGCTTAGGACTGCTTATATTGCACCTTCATCACGGGTCTTTGGGCGAGGT  853

Query  61   GAACTTGTGATTGATCCTGCACAGAT-GTCAAAGAGATATTTTCAACGTTGGTTTATCAT  119
            ||||| |||||||||||||||||||| | ||||||||||| | |||||||||||||| ||
Sbjct  854  GAACTCGTGATTGATCCTGCACAGATAG-CAAAGAGATATCTACAACGTTGGTTTATTAT  912

Query  120  TGATTTTCTCTCAGTACTTCCTGCACC-TCAGGTTG  154
            ||| |||||||||||||||||| | || |||| |||
Sbjct  913  TGACTTTCTCTCAGTACTTCCT-CTCCCTCAGATTG  947


> AT5G56790.1 | Symbols:  | Protein kinase superfamily protein 
| chr5:22967939-22971536 FORWARD LENGTH=2826
Length=2826

 Score =  100 bits (54),  Expect = 5e-21
 Identities = 76/86 (88%), Gaps = 3/86 (3%)
 Strand=Plus/Plus

Query  150   GGTTGGAGATCTCCGG-CTAGCAAGATGGCAACCAGAAGGAGATAAAGGAGTGTTAACCC  208
             |||||||||| | ||| ||||| ||||||||||||||||||||||||||||||  |||||
Sbjct  2261  GGTTGGAGAT-TTCGGACTAGCGAGATGGCAACCAGAAGGAGATAAAGGAGTGGAAACCC  2319

Query  209   GAGTGGTCGGCACTTTCGGGTA-TTG  233
             ||||| | || ||||||||||| |||
Sbjct  2320  GAGTGATTGGAACTTTCGGGTACTTG  2345



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10556227290


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5