BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917537
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58200.2 | Symbols: | Calcineurin-like metallo-phosphoester... 1254 0.0
> AT5G58200.2 | Symbols: | Calcineurin-like metallo-phosphoesterase
superfamily protein | chr5:23549550-23552028 FORWARD LENGTH=1041
Length=1041
Score = 1254 bits (679), Expect = 0.0
Identities = 776/822 (94%), Gaps = 9/822 (1%)
Strand=Plus/Plus
Query 77 CAGGTGATTTTGGTGAGGAAAACGTCCCGCTTGTTCAAAGCGTTGCCGCTCTTACTTTCC 136
|||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||
Sbjct 171 CAGGTGATTTTGGTGAAGAAAACGTCCCACTGGTTCAAAGTGTTGCCGCTCTTACTTTCC 230
Query 137 CTAAAGCAGTTATATTGGGAAATCATGATGCCTGGTTCACCCTTGACTTTCCAA-G---G 192
|||||||||| |||||||| |||||||||||||||||||||| || ||||||| | |
Sbjct 231 CTAAAGCAGTCATATTGGGGAATCATGATGCCTGGTTCACCCAAGATTTTCCAAGGAAAG 290
Query 193 --AAACAAAAACAGAACGGTGTTCAAATGCAACTCGATATCCTTGGTGACGAGCACGTAG 250
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 291 AAAAACAAAAACAAAACGGTGTTCAAATGCAACTCGATATCCTTGGTGACGAGCACATAG 350
Query 251 GATATCAACGCATGGACTTCCCCTCTTTAAAGCTCAGTATTGTTGGTGGTCGACCCTTTT 310
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 351 GATATCAACGCATGGACTTCCCATCTTTTAAGCTCAGTATTGTTGGTGGTCGACCCTTTT 410
Query 311 CA-ATTgggggggATCGATTGTTTCGGAAAAATCTGCTTGTCCAGAGGTATGGAGTTCAT 369
|| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 CACA-TGGTGGGGATCGATTGTTTCGGAAAAATCTGCTTGTCCAGAGGTATGGAGTTCAT 469
Query 370 GATATGGATGCCAGTGCTGGGAGTATTTGTCGAGCTGCACATGGAACACCGGAAGATCAC 429
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 GATATGGAAGCCAGTGCTGGGAGTATTTGTCGAGCTGCACATGGAACACCGGAAGATCAC 529
Query 430 GTGGCTATAATTCTTGCTCATAATGGGCCAACAGGTCTTGGTTCTCAAGCAGAGGATATA 489
|||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 530 GTGGCTATAATTCTCGCTCACAATGGGCCAACAGGTCTTGGTTGGCAAGCAGAGGATATA 589
Query 490 TGTGGAAAAGACTGGGTGGATGAAGCCGGTGACCATGGTGATCCAGATCTAGAGCAGGCG 549
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 590 TGTGGAAAAGACTGGGGGGCTGAAGGCGGTGACCATGGTGATCCAGATCTAGAGCAGGCG 649
Query 550 ATACGACAGTTGAAGGAGACGACGAAGTTGTCGGTTCCTTTAGTAGTGTTTGGACACATG 609
||||||||||||||||||||||| ||||||||| |||||||||| |||||||| ||||||
Sbjct 650 ATACGACAGTTGAAGGAGACGACTAAGTTGTCGATTCCTTTAGTTGTGTTTGGGCACATG 709
Query 610 CATAAGGAGCTTCAACGGGGGAAAGGAAATCGGAAAATGGTAGTGCAAGATGGTGATAAC 669
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 710 CATAAGGAGCTGCAACGGGGGAAAGGAAATCGGAAAATGGTAGTGCAAGATAGTGACAAC 769
Query 670 CAGACTGTTTATGTGAACGGTGCAATAGTTCCAAGGGTTAAAGAGGCAAAGGAAAGAGGA 729
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 770 CAGACTGTGTATGTGAACGGTGCAATAGTTCCAAGGGTTAAAGAGGCAAAGAAAAGAGGA 829
Query 730 GCAGCAGAGTCTGAGAGTGGTGGCACAACCAGAGCTTTCACATTGGTAGAGATTTTAGAT 789
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 830 GCAGCAGAGTCTGAGAGTGGTGGCACAACAAGAGCTTTCACATTGGTGGAGATTTTAGAT 889
Query 790 GGGAAAATCAAGAAAATTGCAGAAATTTGGGTACATGTTAATGGAAGTAGGGCTAAGATT 849
||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||
Sbjct 890 GGGAAAATCAAGAAAATAGCAGAAATTTGGGTACATGTAAATGGAAGTATGGCTAAGATT 949
Query 850 GTGGAGGAAAATACATTGTTTGAAGATGTAACCTTGATTTGA 891
|||||||||||||| ||||||||||||||||||| |||||||
Sbjct 950 GTGGAGGAAAATACTTTGTTTGAAGATGTAACCT-GATTTGA 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43502771302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5