BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917545
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58280.1 | Symbols: | AP2/B3-like transcriptional factor fa... 1214 0.0
> AT5G58280.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr5:23567338-23568670 FORWARD LENGTH=822
Length=822
Score = 1214 bits (657), Expect = 0.0
Identities = 768/819 (94%), Gaps = 18/819 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTATGAGGAAGCTCGCAAGCTCCGTCTTCAAGAGAATCACAAGCGATTTC-AGCT 59
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 7 ATGGCCTATGAGGAAGCTCGCAAGCTCCGTCTTCAAGAGAATCACAAGCGATTTCAATC- 65
Query 60 CAATTTTGCAGCTTTACCTCAATTTCAGCTTCTTCAGCAGCGTAACCCCAGACCCATCGA 119
|||||||| ||||||||| |||||||||||||||||||||||||| | || |||||||||
Sbjct 66 CAATTTTGTAGCTTTACCACAATTTCAGCTTCTTCAGCAGCGTAATCACAAACCCATCGA 125
Query 120 TAAAGCCCTCTTTGCTACTGCTGAACCAAGGCGCTCTTCTCGTGTTCGTACCGTAATTTC 179
|||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 126 TAAAGCCCTCTTAGCTACTGCTGAACCAAGACGCTCTTCCCGTGTTCGTACCGTAATTTC 185
Query 180 TTCCTATCGCGATGATGTCGCCGTAGACACTGGTCGTACTTCGAATCTGAGGAGATCACG 239
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 186 TTCCTATCGCGATGATGTCGTCGTAGACACTGGTCGTACTTCGAATCTGAGGAGATCGCG 245
Query 240 GCATAGCTCTACATGGGCTACCTACATTTCTCGTCCTCTACATGAGTGCAAGTTTGCATC 299
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 246 ACATAGCTCTACATGGGCGACCTACATTTCTCGACCTCTCCATGAGTGCAAGTTTGCATC 305
Query 300 TTACGAAGAAAAGGTTGGAGCACTCAATGCTGCAGAGAAGTTCCAGAGCCGCCTTAAATC 359
||| |||||||||||||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 306 TTATGAAGAAAAGGTTGGAGCATTCAAGGCTGCAGAGAAGTTCCAGAGGAGCCTTAAATC 365
Query 360 TCCACATCCTTCCTTTGTGAAATCTATGGTTCGCTCCCATGTTTACAGTTGCTTTTGGCT 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TCCACATCCTTACTTTGTGAAATCTATGGTTCGCTCCCATGTTTACAGTTGCTTTTGGCT 425
Query 420 GGGGCTTCCTTCAAGATTCTGTGTGGACAATTTTCCTGAGGAAACTATGGAAATAGTACT 479
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 426 GGGGCTTCCTTCAAGATTCTGTGCAGACAATTTTCCTGAGGAAACTATGGAAATAGAACT 485
Query 480 AGAGGATGAAGAAGGCGAAGAGTATGAAGCAGTGTACATTGGGAGAAGAAG-TGGGCTCA 538
|||||||||||||||||||| ||||||||||||||||||||| |||||| | ||| ||||
Sbjct 486 AGAGGATGAAGAAGGCGAAGTGTATGAAGCAGTGTACATTGGTAGAAGA-GCTGGACTCA 544
Query 539 GTGGTGGTTGGAAAAGGTTTGCTCTTGATCATAAATTGGATGATGGTGATGCTCTACTCT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 GTGGTGGTTGGAAAAGGTTTGCTCTTGATCATAAATTGGATGATGGTGATGCTCTACTCT 604
Query 599 TTCAATTGGTTGAACCAAAGAGGTTTAAGATCTATGTGTTTAAAGGAAATGAGAACGCTA 658
|| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 605 TTGAATTGGTTGAACCAAAGAAGTTCAAGATCTATGTGTTTAAAGGAAATGAGAACGCTA 664
Query 659 ATCTTACAAGCGC-AGGAAAGAGAGGCAGAGC---GAC---AAGTgaagaagaagaagaa 711
||||||||||||| || ||||||||||||||| ||| |||||||||||||||||||
Sbjct 665 ATCTTACAAGCGCCAG-AAAGAGAGGCAGAGCAACGACGCCAAGTGAAGAAGAAGAAGAA 723
Query 712 ga------TAAGGATGTTGAAGAATCAGGTGACGAGGAACACAGCTCAAGAGCCACTAAG 765
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 724 GAAGAAGATAAGGATGTTGAAGAATCAGGTGATGAGGAACACAGCTCAAGAGCCACTAAG 783
Query 766 AGATCATCCGCAAGGTTACTAAGGAAGAGGAAAGCATAA 804
|||||||||| ||||||||||||||||||||||||||||
Sbjct 784 AGATCATCCGTAAGGTTACTAAGGAAGAGGAAAGCATAA 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39132400513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5